miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12984 3' -63.2 NC_003387.1 + 44977 1.09 0.00018
Target:  5'- cGCGAUCGCCGCUGCCGCCGAGGCGGUg -3'
miRNA:   3'- -CGCUAGCGGCGACGGCGGCUCCGCCA- -5'
12984 3' -63.2 NC_003387.1 + 11444 0.69 0.211875
Target:  5'- cGUGcccgCGCUGCagcucGCCGCCGGGGCGc- -3'
miRNA:   3'- -CGCua--GCGGCGa----CGGCGGCUCCGCca -5'
12984 3' -63.2 NC_003387.1 + 34196 0.69 0.211875
Target:  5'- cGCGAaCGCCuGCgUGCCaCCGcGGCGGc -3'
miRNA:   3'- -CGCUaGCGG-CG-ACGGcGGCuCCGCCa -5'
12984 3' -63.2 NC_003387.1 + 2547 0.66 0.346327
Target:  5'- cGCGGUCGCCGCggcagauccucgccgUGUaCGCCGAcccGuCGGUc -3'
miRNA:   3'- -CGCUAGCGGCG---------------ACG-GCGGCUc--C-GCCA- -5'
12984 3' -63.2 NC_003387.1 + 48788 0.74 0.09395
Target:  5'- aGC--UCGCCGCUGaUCGCCGcGGCGGc -3'
miRNA:   3'- -CGcuAGCGGCGAC-GGCGGCuCCGCCa -5'
12984 3' -63.2 NC_003387.1 + 9537 0.74 0.096524
Target:  5'- aGCGGU-GCCuGCgcaagccGCCGCCGGGGUGGa -3'
miRNA:   3'- -CGCUAgCGG-CGa------CGGCGGCUCCGCCa -5'
12984 3' -63.2 NC_003387.1 + 132 0.71 0.136595
Target:  5'- uGCGGUCGCCcucGCgauccgcGCCGCCGAGcUGGg -3'
miRNA:   3'- -CGCUAGCGG---CGa------CGGCGGCUCcGCCa -5'
12984 3' -63.2 NC_003387.1 + 2042 0.71 0.147808
Target:  5'- cGCcGUCGCCGagcugGCCGCgGuGGCGGc -3'
miRNA:   3'- -CGcUAGCGGCga---CGGCGgCuCCGCCa -5'
12984 3' -63.2 NC_003387.1 + 51851 0.7 0.186623
Target:  5'- cCGG-CGUCGCUGCCGCgGuGGCcccGGUg -3'
miRNA:   3'- cGCUaGCGGCGACGGCGgCuCCG---CCA- -5'
12984 3' -63.2 NC_003387.1 + 26766 0.69 0.211875
Target:  5'- aGCGAUCgGCCug-GCCGCCGaAGGCa-- -3'
miRNA:   3'- -CGCUAG-CGGcgaCGGCGGC-UCCGcca -5'
12984 3' -63.2 NC_003387.1 + 32343 0.69 0.193413
Target:  5'- gGCuGAUCGCCGcCUaaacgacacaacccCCGCaCGAGGCGGg -3'
miRNA:   3'- -CG-CUAGCGGC-GAc-------------GGCG-GCUCCGCCa -5'
12984 3' -63.2 NC_003387.1 + 28407 0.7 0.177286
Target:  5'- aCGAUCGCCGagcagacccgGCUGCUGcGGCGGc -3'
miRNA:   3'- cGCUAGCGGCga--------CGGCGGCuCCGCCa -5'
12984 3' -63.2 NC_003387.1 + 35607 0.8 0.032044
Target:  5'- aGCGAUCGCCuacggccccgaGgaGcCCGCCGAGGCGGc -3'
miRNA:   3'- -CGCUAGCGG-----------CgaC-GGCGGCUCCGCCa -5'
12984 3' -63.2 NC_003387.1 + 440 0.69 0.201438
Target:  5'- gGCGGUuaagucugucgcCGCCGCgGCgGCCGAcGGCGa- -3'
miRNA:   3'- -CGCUA------------GCGGCGaCGgCGGCU-CCGCca -5'
12984 3' -63.2 NC_003387.1 + 30176 0.74 0.086616
Target:  5'- cGCGAUCGCCucgggcaaggaGCaGUCGCCGAGcCGGUa -3'
miRNA:   3'- -CGCUAGCGG-----------CGaCGGCGGCUCcGCCA- -5'
12984 3' -63.2 NC_003387.1 + 49593 0.7 0.17683
Target:  5'- gGCGGUgGCCuggcaguGCUGCCGCU--GGCGGc -3'
miRNA:   3'- -CGCUAgCGG-------CGACGGCGGcuCCGCCa -5'
12984 3' -63.2 NC_003387.1 + 30409 0.69 0.206079
Target:  5'- uGUGGcUGCCcgaGCUGUCgggugaaaccgagGCCGAGGCGGUg -3'
miRNA:   3'- -CGCUaGCGG---CGACGG-------------CGGCUCCGCCA- -5'
12984 3' -63.2 NC_003387.1 + 32217 0.69 0.211875
Target:  5'- cGCGA-CGCCGC-GCUGCgCGAGcGCGa- -3'
miRNA:   3'- -CGCUaGCGGCGaCGGCG-GCUC-CGCca -5'
12984 3' -63.2 NC_003387.1 + 33460 0.74 0.091442
Target:  5'- cGCGcaaggCgGCCGaaGUCGCCGAGGCGGUc -3'
miRNA:   3'- -CGCua---G-CGGCgaCGGCGGCUCCGCCA- -5'
12984 3' -63.2 NC_003387.1 + 41056 0.72 0.125169
Target:  5'- cGCGAUCGCCGagGCCGCUgucgacgcgaucgaGGGGCGa- -3'
miRNA:   3'- -CGCUAGCGGCgaCGGCGG--------------CUCCGCca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.