miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12984 5' -51.9 NC_003387.1 + 6820 0.66 0.864669
Target:  5'- gUACUGCAgaUCGGGCgGCaGGUCGAu- -3'
miRNA:   3'- gAUGGCGU--AGCUCGaCGaCUAGUUca -5'
12984 5' -51.9 NC_003387.1 + 42162 0.66 0.864669
Target:  5'- -cGCUGUcgAUCGAGgaGCUGAcCGAGc -3'
miRNA:   3'- gaUGGCG--UAGCUCgaCGACUaGUUCa -5'
12984 5' -51.9 NC_003387.1 + 51888 0.66 0.847333
Target:  5'- -gGCCGUcgCGAGaaGCUcGUCGAGg -3'
miRNA:   3'- gaUGGCGuaGCUCgaCGAcUAGUUCa -5'
12984 5' -51.9 NC_003387.1 + 46693 0.66 0.838296
Target:  5'- cCUGCCGCAccUCGuGCcGCUGGacgcCAAGc -3'
miRNA:   3'- -GAUGGCGU--AGCuCGaCGACUa---GUUCa -5'
12984 5' -51.9 NC_003387.1 + 27902 0.66 0.838296
Target:  5'- -aGCCGCccgaguacgcCGAGCUGCUGcgcCAGGUc -3'
miRNA:   3'- gaUGGCGua--------GCUCGACGACua-GUUCA- -5'
12984 5' -51.9 NC_003387.1 + 11268 0.66 0.838296
Target:  5'- -gGCCGCGUCG-GC-GaCUcGAUCAAGg -3'
miRNA:   3'- gaUGGCGUAGCuCGaC-GA-CUAGUUCa -5'
12984 5' -51.9 NC_003387.1 + 45696 0.66 0.826198
Target:  5'- cCUGCCGUugaacgcgaaagcgGcCGAGCUGCUGcgCGAc- -3'
miRNA:   3'- -GAUGGCG--------------UaGCUCGACGACuaGUUca -5'
12984 5' -51.9 NC_003387.1 + 34520 0.67 0.819528
Target:  5'- -cGCCGCGauccUCGGGCUGCccGUCGAc- -3'
miRNA:   3'- gaUGGCGU----AGCUCGACGacUAGUUca -5'
12984 5' -51.9 NC_003387.1 + 19963 0.67 0.779538
Target:  5'- gUACCGCGUCGAcuucacaacGCUGCcc-UCGGGg -3'
miRNA:   3'- gAUGGCGUAGCU---------CGACGacuAGUUCa -5'
12984 5' -51.9 NC_003387.1 + 9701 0.68 0.758505
Target:  5'- -gGCCGUGaCG-GCggGCUGAUCGAGg -3'
miRNA:   3'- gaUGGCGUaGCuCGa-CGACUAGUUCa -5'
12984 5' -51.9 NC_003387.1 + 33431 0.68 0.758505
Target:  5'- -aGCUGgAUCGGGCUGCccgaggcGGUCAGGc -3'
miRNA:   3'- gaUGGCgUAGCUCGACGa------CUAGUUCa -5'
12984 5' -51.9 NC_003387.1 + 27558 0.68 0.747772
Target:  5'- -gACCGCcUCGGGCcGCUGAcaCGAGc -3'
miRNA:   3'- gaUGGCGuAGCUCGaCGACUa-GUUCa -5'
12984 5' -51.9 NC_003387.1 + 39713 0.68 0.736914
Target:  5'- -aGCgGCAgaUCGGGCUGCUGA-CGAc- -3'
miRNA:   3'- gaUGgCGU--AGCUCGACGACUaGUUca -5'
12984 5' -51.9 NC_003387.1 + 41101 0.68 0.730343
Target:  5'- -aGCCGC---GAGCUGCUGGcgcugcacgaccggaUCAAGUg -3'
miRNA:   3'- gaUGGCGuagCUCGACGACU---------------AGUUCA- -5'
12984 5' -51.9 NC_003387.1 + 33793 0.68 0.725941
Target:  5'- -gACCGUcgCGAgaaGCUGCguagGGUCGAGc -3'
miRNA:   3'- gaUGGCGuaGCU---CGACGa---CUAGUUCa -5'
12984 5' -51.9 NC_003387.1 + 46759 0.69 0.702586
Target:  5'- -gGCCGgGUCGAGCgacUcgcgguucggcgaGCUGAUCGAGa -3'
miRNA:   3'- gaUGGCgUAGCUCG---A-------------CGACUAGUUCa -5'
12984 5' -51.9 NC_003387.1 + 29709 0.73 0.438392
Target:  5'- aCUGCUGCGUCGAGCcGgUGAUgCGGGc -3'
miRNA:   3'- -GAUGGCGUAGCUCGaCgACUA-GUUCa -5'
12984 5' -51.9 NC_003387.1 + 48527 0.73 0.428389
Target:  5'- aCUGCUGCAcguagUCGGGCgGCUGAUaCGAGc -3'
miRNA:   3'- -GAUGGCGU-----AGCUCGaCGACUA-GUUCa -5'
12984 5' -51.9 NC_003387.1 + 34436 0.74 0.408794
Target:  5'- -gGCCGgGUCG-GC-GCUGGUCGAGUa -3'
miRNA:   3'- gaUGGCgUAGCuCGaCGACUAGUUCA- -5'
12984 5' -51.9 NC_003387.1 + 45014 1.08 0.002211
Target:  5'- aCUACCGCAUCGAGCUGCUGAUCAAGUc -3'
miRNA:   3'- -GAUGGCGUAGCUCGACGACUAGUUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.