miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12987 5' -57.1 NC_003387.1 + 1294 0.66 0.611185
Target:  5'- uGCgC-CUCgACGCCcugGCgGGCGACGUCg -3'
miRNA:   3'- uCG-GcGAGaUGCGGa--UG-UCGCUGCAG- -5'
12987 5' -57.1 NC_003387.1 + 16693 0.66 0.604611
Target:  5'- cGGuuGCUCUugaucCGCUUGCGGCGcaccacgaccucgcCGUCg -3'
miRNA:   3'- -UCggCGAGAu----GCGGAUGUCGCu-------------GCAG- -5'
12987 5' -57.1 NC_003387.1 + 13069 0.66 0.589308
Target:  5'- uGCUGCUCccACGCCaUGC-GCGACaccggGUCg -3'
miRNA:   3'- uCGGCGAGa-UGCGG-AUGuCGCUG-----CAG- -5'
12987 5' -57.1 NC_003387.1 + 3495 0.66 0.589308
Target:  5'- cAGCCGCUCggcCGCCUcgacCGGCaGAucCGUUg -3'
miRNA:   3'- -UCGGCGAGau-GCGGAu---GUCG-CU--GCAG- -5'
12987 5' -57.1 NC_003387.1 + 36202 0.66 0.589308
Target:  5'- cGCUGCUgugGCGCCU-CGGCGuaaucgagguCGUCg -3'
miRNA:   3'- uCGGCGAga-UGCGGAuGUCGCu---------GCAG- -5'
12987 5' -57.1 NC_003387.1 + 30699 0.66 0.589308
Target:  5'- gGGgCGUUUucgUGCGCCUGCGG-GGCGcUCa -3'
miRNA:   3'- -UCgGCGAG---AUGCGGAUGUCgCUGC-AG- -5'
12987 5' -57.1 NC_003387.1 + 37797 0.66 0.578419
Target:  5'- cGCCGCU--GCGCCgguagccgcGCAGCcgucACGUCg -3'
miRNA:   3'- uCGGCGAgaUGCGGa--------UGUCGc---UGCAG- -5'
12987 5' -57.1 NC_003387.1 + 18208 0.66 0.578419
Target:  5'- cAGcCCGaggaUCgcgGCGCC-GCAGCGGCGg- -3'
miRNA:   3'- -UC-GGCg---AGa--UGCGGaUGUCGCUGCag -5'
12987 5' -57.1 NC_003387.1 + 6363 0.66 0.578419
Target:  5'- uGUCGCgCUugGCCUcgGCcgcgGGCGACGcCu -3'
miRNA:   3'- uCGGCGaGAugCGGA--UG----UCGCUGCaG- -5'
12987 5' -57.1 NC_003387.1 + 15475 0.66 0.576246
Target:  5'- gGGCCgacacguucaGCUCgucgaaaucguCGCCcACGGCGGCGUUu -3'
miRNA:   3'- -UCGG----------CGAGau---------GCGGaUGUCGCUGCAG- -5'
12987 5' -57.1 NC_003387.1 + 17039 0.66 0.567574
Target:  5'- uGCCGCcCU-CGCCg--GGCGuCGUCg -3'
miRNA:   3'- uCGGCGaGAuGCGGaugUCGCuGCAG- -5'
12987 5' -57.1 NC_003387.1 + 15299 0.66 0.567574
Target:  5'- cGGCUugggGCUCUugGUCgcCAucGCGACGUUg -3'
miRNA:   3'- -UCGG----CGAGAugCGGauGU--CGCUGCAG- -5'
12987 5' -57.1 NC_003387.1 + 7810 0.66 0.567574
Target:  5'- gAGCUGCa--ACGCCUgGCGGCcGAgGUCg -3'
miRNA:   3'- -UCGGCGagaUGCGGA-UGUCG-CUgCAG- -5'
12987 5' -57.1 NC_003387.1 + 39841 0.66 0.567574
Target:  5'- aGGCCGCUCacguugACGCCagACGGCaaaGACa-- -3'
miRNA:   3'- -UCGGCGAGa-----UGCGGa-UGUCG---CUGcag -5'
12987 5' -57.1 NC_003387.1 + 2437 0.66 0.566492
Target:  5'- cAGCCGUUCUcgACgGCCUucacgaucaccucGguGCGcACGUCg -3'
miRNA:   3'- -UCGGCGAGA--UG-CGGA-------------UguCGC-UGCAG- -5'
12987 5' -57.1 NC_003387.1 + 632 0.66 0.556781
Target:  5'- gGGCaGCgUCgcCGCCgcgGCAGCGACGcCc -3'
miRNA:   3'- -UCGgCG-AGauGCGGa--UGUCGCUGCaG- -5'
12987 5' -57.1 NC_003387.1 + 15949 0.66 0.556781
Target:  5'- cGGCCGaCUC-GCGCCUGCAuGUGcuuGCGg- -3'
miRNA:   3'- -UCGGC-GAGaUGCGGAUGU-CGC---UGCag -5'
12987 5' -57.1 NC_003387.1 + 9711 0.66 0.556781
Target:  5'- -aCCGCUCgggguguucaGCGCgUACGGguCGGCGUCa -3'
miRNA:   3'- ucGGCGAGa---------UGCGgAUGUC--GCUGCAG- -5'
12987 5' -57.1 NC_003387.1 + 31017 0.66 0.556781
Target:  5'- gGGCCGagcgUGCGCCgggGCGGCGGCc-- -3'
miRNA:   3'- -UCGGCgag-AUGCGGa--UGUCGCUGcag -5'
12987 5' -57.1 NC_003387.1 + 23023 0.66 0.556781
Target:  5'- cGCCGCcgaGCGCCUcgaccucggccACGuCGACGUCg -3'
miRNA:   3'- uCGGCGagaUGCGGA-----------UGUcGCUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.