Results 41 - 60 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12991 | 5' | -59.7 | NC_003387.1 | + | 15835 | 0.68 | 0.340722 |
Target: 5'- uGACGCCGaCGCGGuGCCCGuCGGcgagcacAAUCGu -3' miRNA: 3'- -CUGUGGCcGCGUC-CGGGC-GUC-------UUAGC- -5' |
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12991 | 5' | -59.7 | NC_003387.1 | + | 19456 | 0.68 | 0.333548 |
Target: 5'- gGGgAUCGGCgGCAGGCCgGgCAGGacGUCGu -3' miRNA: 3'- -CUgUGGCCG-CGUCCGGgC-GUCU--UAGC- -5' |
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12991 | 5' | -59.7 | NC_003387.1 | + | 1771 | 0.69 | 0.324156 |
Target: 5'- cGGCGCUGGCGCccgagcugaaaGCCCGCAaGGUCa -3' miRNA: 3'- -CUGUGGCCGCGuc---------CGGGCGUcUUAGc -5' |
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12991 | 5' | -59.7 | NC_003387.1 | + | 4591 | 0.69 | 0.310439 |
Target: 5'- cGCGCUGcGCGCGGGUCUGCcacguGAUCGg -3' miRNA: 3'- cUGUGGC-CGCGUCCGGGCGuc---UUAGC- -5' |
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12991 | 5' | -59.7 | NC_003387.1 | + | 48488 | 0.69 | 0.303012 |
Target: 5'- uGAgGCCGucGCgGCGGGCCUGCAGGuaAUCc -3' miRNA: 3'- -CUgUGGC--CG-CGUCCGGGCGUCU--UAGc -5' |
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12991 | 5' | -59.7 | NC_003387.1 | + | 29423 | 0.69 | 0.303012 |
Target: 5'- gGAgGCCGcCGCAgcGGCCCGCGcGGUCGc -3' miRNA: 3'- -CUgUGGCcGCGU--CCGGGCGUcUUAGC- -5' |
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12991 | 5' | -59.7 | NC_003387.1 | + | 14931 | 0.69 | 0.295722 |
Target: 5'- cGGCuACCGGCGCAGcggcgcaucCCCGguGGuAUCGg -3' miRNA: 3'- -CUG-UGGCCGCGUCc--------GGGCguCU-UAGC- -5' |
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12991 | 5' | -59.7 | NC_003387.1 | + | 44276 | 0.69 | 0.288569 |
Target: 5'- cGCGCCGcGCGguGGCUCGCcGuGUCu -3' miRNA: 3'- cUGUGGC-CGCguCCGGGCGuCuUAGc -5' |
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12991 | 5' | -59.7 | NC_003387.1 | + | 24865 | 0.69 | 0.288569 |
Target: 5'- cGCGCCGGUGUcgaucguGGCgCCGCGGcuGUCGa -3' miRNA: 3'- cUGUGGCCGCGu------CCG-GGCGUCu-UAGC- -5' |
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12991 | 5' | -59.7 | NC_003387.1 | + | 31256 | 0.7 | 0.267928 |
Target: 5'- --gACCGGCGCGGGCUgcgccaGCGGGGcCGg -3' miRNA: 3'- cugUGGCCGCGUCCGGg-----CGUCUUaGC- -5' |
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12991 | 5' | -59.7 | NC_003387.1 | + | 41801 | 0.7 | 0.267928 |
Target: 5'- cGAC-CUGGCGCAcGCCUgGCAGAucAUCGa -3' miRNA: 3'- -CUGuGGCCGCGUcCGGG-CGUCU--UAGC- -5' |
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12991 | 5' | -59.7 | NC_003387.1 | + | 2719 | 0.7 | 0.261317 |
Target: 5'- cGACGCgGGCggcggGCAGGCCaCGCAGcAGcCGg -3' miRNA: 3'- -CUGUGgCCG-----CGUCCGG-GCGUC-UUaGC- -5' |
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12991 | 5' | -59.7 | NC_003387.1 | + | 1295 | 0.7 | 0.25484 |
Target: 5'- --gACCGGCGCAguucgaggcGGCgCCGCAGGcgCu -3' miRNA: 3'- cugUGGCCGCGU---------CCG-GGCGUCUuaGc -5' |
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12991 | 5' | -59.7 | NC_003387.1 | + | 21467 | 0.71 | 0.242282 |
Target: 5'- -cCGCUGGCGCA-GCCCGCGccgGUCGg -3' miRNA: 3'- cuGUGGCCGCGUcCGGGCGUcu-UAGC- -5' |
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12991 | 5' | -59.7 | NC_003387.1 | + | 4774 | 0.72 | 0.20768 |
Target: 5'- cGGCGCCGugacuucauGuCGCAGGCCCGCGGcgaCGg -3' miRNA: 3'- -CUGUGGC---------C-GCGUCCGGGCGUCuuaGC- -5' |
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12991 | 5' | -59.7 | NC_003387.1 | + | 42146 | 0.72 | 0.20768 |
Target: 5'- cGugG-CGGCGguGGCCCGCuGucGAUCGa -3' miRNA: 3'- -CugUgGCCGCguCCGGGCGuC--UUAGC- -5' |
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12991 | 5' | -59.7 | NC_003387.1 | + | 22556 | 0.72 | 0.204465 |
Target: 5'- cGACGCggUGGCGCAGgcagauaacccgcacGCCCGCGGGuUCGc -3' miRNA: 3'- -CUGUG--GCCGCGUC---------------CGGGCGUCUuAGC- -5' |
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12991 | 5' | -59.7 | NC_003387.1 | + | 49070 | 0.72 | 0.194059 |
Target: 5'- -uCACCGG-GCAGGCUCGCGGcgcgcaggcguacgaAGUCGa -3' miRNA: 3'- cuGUGGCCgCGUCCGGGCGUC---------------UUAGC- -5' |
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12991 | 5' | -59.7 | NC_003387.1 | + | 6987 | 0.72 | 0.187053 |
Target: 5'- -cCACUuGUGCAGGCgCCGCAGAauGUCGc -3' miRNA: 3'- cuGUGGcCGCGUCCG-GGCGUCU--UAGC- -5' |
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12991 | 5' | -59.7 | NC_003387.1 | + | 21542 | 0.73 | 0.177431 |
Target: 5'- aGCACCGGCGac-GCCCGCGucGUCGu -3' miRNA: 3'- cUGUGGCCGCgucCGGGCGUcuUAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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