Results 21 - 40 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12992 | 5' | -60.9 | NC_003387.1 | + | 26041 | 0.66 | 0.372842 |
Target: 5'- -aGCAGcGCgAGCUGCacgaaacgcaGCACCCGGUu -3' miRNA: 3'- ccCGUCaCG-UCGAUGg---------CGUGGGCCGu -5' |
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12992 | 5' | -60.9 | NC_003387.1 | + | 35863 | 0.66 | 0.399035 |
Target: 5'- uGGGC-GUGCGGCgccaucuCCuCGCgCGGCGu -3' miRNA: 3'- -CCCGuCACGUCGau-----GGcGUGgGCCGU- -5' |
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12992 | 5' | -60.9 | NC_003387.1 | + | 33429 | 0.66 | 0.405315 |
Target: 5'- cGGCuGUGCcuGCUGCUGCGCgCCaccaccucgcgcaaGGCGg -3' miRNA: 3'- cCCGuCACGu-CGAUGGCGUG-GG--------------CCGU- -5' |
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12992 | 5' | -60.9 | NC_003387.1 | + | 7338 | 0.66 | 0.364375 |
Target: 5'- cGGGCGGccgggcGCAGCUaACCGC---CGGCAa -3' miRNA: 3'- -CCCGUCa-----CGUCGA-UGGCGuggGCCGU- -5' |
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12992 | 5' | -60.9 | NC_003387.1 | + | 27977 | 0.66 | 0.364375 |
Target: 5'- uGGcCGGUGCcGUUGCgGCGCCCucgauuucGGCGa -3' miRNA: 3'- cCC-GUCACGuCGAUGgCGUGGG--------CCGU- -5' |
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12992 | 5' | -60.9 | NC_003387.1 | + | 964 | 0.66 | 0.364375 |
Target: 5'- cGGGCGG-GUAGUuguguaUGCCGCcGCCgaGGCGc -3' miRNA: 3'- -CCCGUCaCGUCG------AUGGCG-UGGg-CCGU- -5' |
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12992 | 5' | -60.9 | NC_003387.1 | + | 21106 | 0.67 | 0.324064 |
Target: 5'- aGGGCGGUGCGGUcacgaaUACCGaGgCgGGCc -3' miRNA: 3'- -CCCGUCACGUCG------AUGGCgUgGgCCGu -5' |
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12992 | 5' | -60.9 | NC_003387.1 | + | 261 | 0.67 | 0.331854 |
Target: 5'- -uGCAGUGCccuGGCUgcGCCGCG-CCGGUc -3' miRNA: 3'- ccCGUCACG---UCGA--UGGCGUgGGCCGu -5' |
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12992 | 5' | -60.9 | NC_003387.1 | + | 21948 | 0.67 | 0.33978 |
Target: 5'- gGGGCGGcggcaggcgucUGCGGCgcuguucaacUACggUGCGCCCGGUg -3' miRNA: 3'- -CCCGUC-----------ACGUCG----------AUG--GCGUGGGCCGu -5' |
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12992 | 5' | -60.9 | NC_003387.1 | + | 3240 | 0.67 | 0.355215 |
Target: 5'- cGGCgAGUcaugggaGCAaCUGCUGCGCCUGGCc -3' miRNA: 3'- cCCG-UCA-------CGUcGAUGGCGUGGGCCGu -5' |
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12992 | 5' | -60.9 | NC_003387.1 | + | 36758 | 0.67 | 0.33978 |
Target: 5'- uGGGCGucaccGU-CAGCgACCgGCACUCGGCGc -3' miRNA: 3'- -CCCGU-----CAcGUCGaUGG-CGUGGGCCGU- -5' |
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12992 | 5' | -60.9 | NC_003387.1 | + | 23823 | 0.67 | 0.356042 |
Target: 5'- cGGGCGGUGgccCGGCgcCCGCGCCUaagccgccGCAg -3' miRNA: 3'- -CCCGUCAC---GUCGauGGCGUGGGc-------CGU- -5' |
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12992 | 5' | -60.9 | NC_003387.1 | + | 41199 | 0.67 | 0.33978 |
Target: 5'- nGGC-GUGCA-CUACCGCugCCcgaauaagcacGGCAa -3' miRNA: 3'- cCCGuCACGUcGAUGGCGugGG-----------CCGU- -5' |
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12992 | 5' | -60.9 | NC_003387.1 | + | 12199 | 0.67 | 0.356041 |
Target: 5'- cGGGCAG-GUcGCUGCUcgGUGCCgGGCc -3' miRNA: 3'- -CCCGUCaCGuCGAUGG--CGUGGgCCGu -5' |
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12992 | 5' | -60.9 | NC_003387.1 | + | 48091 | 0.67 | 0.356042 |
Target: 5'- cGGGUGGcGCuGCcGCUGCGCCC-GCGg -3' miRNA: 3'- -CCCGUCaCGuCGaUGGCGUGGGcCGU- -5' |
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12992 | 5' | -60.9 | NC_003387.1 | + | 44508 | 0.67 | 0.356042 |
Target: 5'- cGGCAGuUGCGucuGUucgUGCCGggcCGCCCGGCGc -3' miRNA: 3'- cCCGUC-ACGU---CG---AUGGC---GUGGGCCGU- -5' |
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12992 | 5' | -60.9 | NC_003387.1 | + | 29782 | 0.67 | 0.316411 |
Target: 5'- -cGCGGU-CAGCUugCGCGuguaUCCGGCGc -3' miRNA: 3'- ccCGUCAcGUCGAugGCGU----GGGCCGU- -5' |
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12992 | 5' | -60.9 | NC_003387.1 | + | 17084 | 0.67 | 0.331853 |
Target: 5'- cGGcCAGUGCccGCccgGCCGC-CUCGGCGg -3' miRNA: 3'- cCC-GUCACGu-CGa--UGGCGuGGGCCGU- -5' |
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12992 | 5' | -60.9 | NC_003387.1 | + | 3838 | 0.67 | 0.347843 |
Target: 5'- aGGGCGGcgcgguagGCGGC-GCCGacgAUCCGGCu -3' miRNA: 3'- -CCCGUCa-------CGUCGaUGGCg--UGGGCCGu -5' |
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12992 | 5' | -60.9 | NC_003387.1 | + | 7844 | 0.67 | 0.347843 |
Target: 5'- cGGCGGcUGCgucAGCUcgGCCaGCACCuugCGGCAg -3' miRNA: 3'- cCCGUC-ACG---UCGA--UGG-CGUGG---GCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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