miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12992 5' -60.9 NC_003387.1 + 6035 0.66 0.408024
Target:  5'- cGGCacgaGGUGCGGCagg-GCGCCgGGCAg -3'
miRNA:   3'- cCCG----UCACGUCGauggCGUGGgCCGU- -5'
12992 5' -60.9 NC_003387.1 + 43852 0.66 0.361861
Target:  5'- gGGGCGGUGCAccaguGCUauaucgcgugggccAUCGCGCaCGGUg -3'
miRNA:   3'- -CCCGUCACGU-----CGA--------------UGGCGUGgGCCGu -5'
12992 5' -60.9 NC_003387.1 + 44625 0.66 0.399036
Target:  5'- uGGCGcgagcGUGUGGCccugGCCGCGgCCuCGGCGa -3'
miRNA:   3'- cCCGU-----CACGUCGa---UGGCGU-GG-GCCGU- -5'
12992 5' -60.9 NC_003387.1 + 45379 0.66 0.417139
Target:  5'- -uGCcg-GCGGUUaGCUGCGCCCGGCc -3'
miRNA:   3'- ccCGucaCGUCGA-UGGCGUGGGCCGu -5'
12992 5' -60.9 NC_003387.1 + 7527 0.66 0.363535
Target:  5'- aGGGUgaacgagAGcgGCAcuGCUGCCGC-CCUGGCc -3'
miRNA:   3'- -CCCG-------UCa-CGU--CGAUGGCGuGGGCCGu -5'
12992 5' -60.9 NC_003387.1 + 7799 0.66 0.364375
Target:  5'- aGGuGCAG-GCcgAGCUGCaaCGCCUGGCGg -3'
miRNA:   3'- -CC-CGUCaCG--UCGAUGgcGUGGGCCGU- -5'
12992 5' -60.9 NC_003387.1 + 32494 0.66 0.372842
Target:  5'- cGGCgccguGGUGCGacGaCUGCCGCugcgugcacGCCCGGCc -3'
miRNA:   3'- cCCG-----UCACGU--C-GAUGGCG---------UGGGCCGu -5'
12992 5' -60.9 NC_003387.1 + 31033 0.66 0.390174
Target:  5'- gGGGCGGcgGcCAGC-ACgGCA-CCGGCGc -3'
miRNA:   3'- -CCCGUCa-C-GUCGaUGgCGUgGGCCGU- -5'
12992 5' -60.9 NC_003387.1 + 16884 0.66 0.393704
Target:  5'- aGGCGaUGCAcgacauagccgacgcGCUGCaGUACCCGGCc -3'
miRNA:   3'- cCCGUcACGU---------------CGAUGgCGUGGGCCGu -5'
12992 5' -60.9 NC_003387.1 + 7338 0.66 0.364375
Target:  5'- cGGGCGGccgggcGCAGCUaACCGC---CGGCAa -3'
miRNA:   3'- -CCCGUCa-----CGUCGA-UGGCGuggGCCGU- -5'
12992 5' -60.9 NC_003387.1 + 27977 0.66 0.364375
Target:  5'- uGGcCGGUGCcGUUGCgGCGCCCucgauuucGGCGa -3'
miRNA:   3'- cCC-GUCACGuCGAUGgCGUGGG--------CCGU- -5'
12992 5' -60.9 NC_003387.1 + 964 0.66 0.364375
Target:  5'- cGGGCGG-GUAGUuguguaUGCCGCcGCCgaGGCGc -3'
miRNA:   3'- -CCCGUCaCGUCG------AUGGCG-UGGg-CCGU- -5'
12992 5' -60.9 NC_003387.1 + 25562 0.66 0.408024
Target:  5'- gGGGCA--GCAGCUucgcgaCGCGCUCGGa- -3'
miRNA:   3'- -CCCGUcaCGUCGAug----GCGUGGGCCgu -5'
12992 5' -60.9 NC_003387.1 + 35863 0.66 0.399035
Target:  5'- uGGGC-GUGCGGCgccaucuCCuCGCgCGGCGu -3'
miRNA:   3'- -CCCGuCACGUCGau-----GGcGUGgGCCGU- -5'
12992 5' -60.9 NC_003387.1 + 20178 0.66 0.399035
Target:  5'- gGGcGCGGUugauGC-GCUGCUGCGCCUcGCAc -3'
miRNA:   3'- -CC-CGUCA----CGuCGAUGGCGUGGGcCGU- -5'
12992 5' -60.9 NC_003387.1 + 33954 0.66 0.387541
Target:  5'- cGGCAGcuUGCcggggucggguaugAGCUGCCGCAgCgGGUc -3'
miRNA:   3'- cCCGUC--ACG--------------UCGAUGGCGUgGgCCGu -5'
12992 5' -60.9 NC_003387.1 + 20924 0.66 0.381442
Target:  5'- cGGcGCGGUGCAGUUuuCUGCACUuucUGGUu -3'
miRNA:   3'- -CC-CGUCACGUCGAu-GGCGUGG---GCCGu -5'
12992 5' -60.9 NC_003387.1 + 8709 0.66 0.381442
Target:  5'- aGGGUgaGGUGCuGUcACCGuUugCUGGCAg -3'
miRNA:   3'- -CCCG--UCACGuCGaUGGC-GugGGCCGU- -5'
12992 5' -60.9 NC_003387.1 + 15264 0.66 0.372842
Target:  5'- uGGCGGcGCAGC-GCCGCcaGCauGGCAa -3'
miRNA:   3'- cCCGUCaCGUCGaUGGCG--UGggCCGU- -5'
12992 5' -60.9 NC_003387.1 + 26041 0.66 0.372842
Target:  5'- -aGCAGcGCgAGCUGCacgaaacgcaGCACCCGGUu -3'
miRNA:   3'- ccCGUCaCG-UCGAUGg---------CGUGGGCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.