miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12992 5' -60.9 NC_003387.1 + 47816 1.1 0.000194
Target:  5'- cGGGCAGUGCAGCUACCGCACCCGGCAg -3'
miRNA:   3'- -CCCGUCACGUCGAUGGCGUGGGCCGU- -5'
12992 5' -60.9 NC_003387.1 + 14923 0.7 0.212228
Target:  5'- cGGCuGcGCGGCUACCgGCGCagCGGCGc -3'
miRNA:   3'- cCCGuCaCGUCGAUGG-CGUGg-GCCGU- -5'
12992 5' -60.9 NC_003387.1 + 7345 0.7 0.223435
Target:  5'- cGGC--UGCGGCcgUACCGCACC-GGCAu -3'
miRNA:   3'- cCCGucACGUCG--AUGGCGUGGgCCGU- -5'
12992 5' -60.9 NC_003387.1 + 45379 0.66 0.417139
Target:  5'- -uGCcg-GCGGUUaGCUGCGCCCGGCc -3'
miRNA:   3'- ccCGucaCGUCGA-UGGCGUGGGCCGu -5'
12992 5' -60.9 NC_003387.1 + 41168 0.74 0.121283
Target:  5'- aGGGCgAGUGCGGCcgGUCGCACCguuuCGGCGg -3'
miRNA:   3'- -CCCG-UCACGUCGa-UGGCGUGG----GCCGU- -5'
12992 5' -60.9 NC_003387.1 + 33760 0.73 0.13894
Target:  5'- aGGGCAacgGCGGC-GCCGCgagcgguuugGCCCGGCu -3'
miRNA:   3'- -CCCGUca-CGUCGaUGGCG----------UGGGCCGu -5'
12992 5' -60.9 NC_003387.1 + 12946 0.73 0.142359
Target:  5'- cGGCAGUGCcacgucggcgucuGGCgGCUGUACCgGGCGg -3'
miRNA:   3'- cCCGUCACG-------------UCGaUGGCGUGGgCCGU- -5'
12992 5' -60.9 NC_003387.1 + 11092 0.72 0.154732
Target:  5'- aGGGC-GUGCAGCcGCuCGCgACCgGGCu -3'
miRNA:   3'- -CCCGuCACGUCGaUG-GCG-UGGgCCGu -5'
12992 5' -60.9 NC_003387.1 + 15563 0.72 0.163224
Target:  5'- cGGaGGUGCAGCcgauUCGCGCCUGGCu -3'
miRNA:   3'- cCCgUCACGUCGau--GGCGUGGGCCGu -5'
12992 5' -60.9 NC_003387.1 + 21431 0.7 0.206808
Target:  5'- cGGCGcaGCAGCUACgGCuggucaacuaACCCGGCc -3'
miRNA:   3'- cCCGUcaCGUCGAUGgCG----------UGGGCCGu -5'
12992 5' -60.9 NC_003387.1 + 625 0.71 0.172133
Target:  5'- aGGGCgAGgGCAGCgucGCCGC-CgCGGCAg -3'
miRNA:   3'- -CCCG-UCaCGUCGa--UGGCGuGgGCCGU- -5'
12992 5' -60.9 NC_003387.1 + 25863 0.72 0.163224
Target:  5'- aGGGUGGccUGCAGUUGCCGagcgGCCUGGUg -3'
miRNA:   3'- -CCCGUC--ACGUCGAUGGCg---UGGGCCGu -5'
12992 5' -60.9 NC_003387.1 + 4295 0.78 0.05713
Target:  5'- cGGGCGa-GCAGCgcACCGCgACCCGGCAg -3'
miRNA:   3'- -CCCGUcaCGUCGa-UGGCG-UGGGCCGU- -5'
12992 5' -60.9 NC_003387.1 + 17014 0.71 0.176749
Target:  5'- cGGGCGcuaaucaaaccGcgGCGGCUGCCGCccucGCCgGGCGu -3'
miRNA:   3'- -CCCGU-----------Ca-CGUCGAUGGCG----UGGgCCGU- -5'
12992 5' -60.9 NC_003387.1 + 39221 0.78 0.060456
Target:  5'- cGGGCAGUgggaGCGGgUACCgGCGCCgGGCGa -3'
miRNA:   3'- -CCCGUCA----CGUCgAUGG-CGUGGgCCGU- -5'
12992 5' -60.9 NC_003387.1 + 13578 0.72 0.154732
Target:  5'- cGGGCAGgacGuCGGCUggucGCCGCAgUCUGGCAg -3'
miRNA:   3'- -CCCGUCa--C-GUCGA----UGGCGU-GGGCCGU- -5'
12992 5' -60.9 NC_003387.1 + 28744 0.71 0.186311
Target:  5'- aGGCGGUGCA-CaACCaGcCGCCCGGCGc -3'
miRNA:   3'- cCCGUCACGUcGaUGG-C-GUGGGCCGU- -5'
12992 5' -60.9 NC_003387.1 + 20637 0.7 0.21777
Target:  5'- cGGCGG-GCAaugUGCCGCuCCCGGCGa -3'
miRNA:   3'- cCCGUCaCGUcg-AUGGCGuGGGCCGU- -5'
12992 5' -60.9 NC_003387.1 + 49819 0.74 0.111713
Target:  5'- -cGCcc-GCGGcCUGCCGCGCCCGGCGa -3'
miRNA:   3'- ccCGucaCGUC-GAUGGCGUGGGCCGU- -5'
12992 5' -60.9 NC_003387.1 + 22048 0.73 0.13894
Target:  5'- uGGGCGGUGgCGGCgaucACCgGCACCguUGGCGa -3'
miRNA:   3'- -CCCGUCAC-GUCGa---UGG-CGUGG--GCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.