miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12992 5' -60.9 NC_003387.1 + 150 0.68 0.273364
Target:  5'- cGGGCGGUuu-GCUACCacucGCGCUCGGUc -3'
miRNA:   3'- -CCCGUCAcguCGAUGG----CGUGGGCCGu -5'
12992 5' -60.9 NC_003387.1 + 261 0.67 0.331854
Target:  5'- -uGCAGUGCccuGGCUgcGCCGCG-CCGGUc -3'
miRNA:   3'- ccCGUCACG---UCGA--UGGCGUgGGCCGu -5'
12992 5' -60.9 NC_003387.1 + 625 0.71 0.172133
Target:  5'- aGGGCgAGgGCAGCgucGCCGC-CgCGGCAg -3'
miRNA:   3'- -CCCG-UCaCGUCGa--UGGCGuGgGCCGU- -5'
12992 5' -60.9 NC_003387.1 + 964 0.66 0.364375
Target:  5'- cGGGCGG-GUAGUuguguaUGCCGCcGCCgaGGCGc -3'
miRNA:   3'- -CCCGUCaCGUCG------AUGGCG-UGGg-CCGU- -5'
12992 5' -60.9 NC_003387.1 + 1268 0.69 0.253661
Target:  5'- cGGuuGCGGUGCGGCUGCgCGgCGuucgaCCGGCGc -3'
miRNA:   3'- -CC--CGUCACGUCGAUG-GC-GUg----GGCCGU- -5'
12992 5' -60.9 NC_003387.1 + 2380 0.68 0.273364
Target:  5'- -cGUGGU-CGGCUACCGCAacgcCCUGGCGa -3'
miRNA:   3'- ccCGUCAcGUCGAUGGCGU----GGGCCGU- -5'
12992 5' -60.9 NC_003387.1 + 3119 0.69 0.235141
Target:  5'- gGGGCcgccAGcgGCAGC-ACUGCcaggccaccGCCCGGCAg -3'
miRNA:   3'- -CCCG----UCa-CGUCGaUGGCG---------UGGGCCGU- -5'
12992 5' -60.9 NC_003387.1 + 3240 0.67 0.355215
Target:  5'- cGGCgAGUcaugggaGCAaCUGCUGCGCCUGGCc -3'
miRNA:   3'- cCCG-UCA-------CGUcGAUGGCGUGGGCCGu -5'
12992 5' -60.9 NC_003387.1 + 3631 0.69 0.253662
Target:  5'- cGGGC-GUGCGGgUAUCGCcgucgaCCGGCu -3'
miRNA:   3'- -CCCGuCACGUCgAUGGCGug----GGCCGu -5'
12992 5' -60.9 NC_003387.1 + 3838 0.67 0.347843
Target:  5'- aGGGCGGcgcgguagGCGGC-GCCGacgAUCCGGCu -3'
miRNA:   3'- -CCCGUCa-------CGUCGaUGGCg--UGGGCCGu -5'
12992 5' -60.9 NC_003387.1 + 4295 0.78 0.05713
Target:  5'- cGGGCGa-GCAGCgcACCGCgACCCGGCAg -3'
miRNA:   3'- -CCCGUcaCGUCGa-UGGCG-UGGGCCGU- -5'
12992 5' -60.9 NC_003387.1 + 4896 0.7 0.201507
Target:  5'- aGGCugaucugccgGGUGCGGUaGCUGCacuGCCCGGCGc -3'
miRNA:   3'- cCCG----------UCACGUCGaUGGCG---UGGGCCGU- -5'
12992 5' -60.9 NC_003387.1 + 6035 0.66 0.408024
Target:  5'- cGGCacgaGGUGCGGCagg-GCGCCgGGCAg -3'
miRNA:   3'- cCCG----UCACGUCGauggCGUGGgCCGU- -5'
12992 5' -60.9 NC_003387.1 + 7338 0.66 0.364375
Target:  5'- cGGGCGGccgggcGCAGCUaACCGC---CGGCAa -3'
miRNA:   3'- -CCCGUCa-----CGUCGA-UGGCGuggGCCGU- -5'
12992 5' -60.9 NC_003387.1 + 7345 0.7 0.223435
Target:  5'- cGGC--UGCGGCcgUACCGCACC-GGCAu -3'
miRNA:   3'- cCCGucACGUCG--AUGGCGUGGgCCGU- -5'
12992 5' -60.9 NC_003387.1 + 7527 0.66 0.363535
Target:  5'- aGGGUgaacgagAGcgGCAcuGCUGCCGC-CCUGGCc -3'
miRNA:   3'- -CCCG-------UCa-CGU--CGAUGGCGuGGGCCGu -5'
12992 5' -60.9 NC_003387.1 + 7726 0.7 0.201507
Target:  5'- cGGUAGUGCcucacAGC-ACCGC-CUCGGCGg -3'
miRNA:   3'- cCCGUCACG-----UCGaUGGCGuGGGCCGU- -5'
12992 5' -60.9 NC_003387.1 + 7799 0.66 0.364375
Target:  5'- aGGuGCAG-GCcgAGCUGCaaCGCCUGGCGg -3'
miRNA:   3'- -CC-CGUCaCG--UCGAUGgcGUGGGCCGU- -5'
12992 5' -60.9 NC_003387.1 + 7844 0.67 0.347843
Target:  5'- cGGCGGcUGCgucAGCUcgGCCaGCACCuugCGGCAg -3'
miRNA:   3'- cCCGUC-ACG---UCGA--UGG-CGUGG---GCCGU- -5'
12992 5' -60.9 NC_003387.1 + 7975 0.71 0.172133
Target:  5'- cGGCGG-GCGGgUGCUGCGCuUCGGCGc -3'
miRNA:   3'- cCCGUCaCGUCgAUGGCGUG-GGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.