miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12992 5' -60.9 NC_003387.1 + 47816 1.1 0.000194
Target:  5'- cGGGCAGUGCAGCUACCGCACCCGGCAg -3'
miRNA:   3'- -CCCGUCACGUCGAUGGCGUGGGCCGU- -5'
12992 5' -60.9 NC_003387.1 + 4295 0.78 0.05713
Target:  5'- cGGGCGa-GCAGCgcACCGCgACCCGGCAg -3'
miRNA:   3'- -CCCGUcaCGUCGa-UGGCG-UGGGCCGU- -5'
12992 5' -60.9 NC_003387.1 + 39221 0.78 0.060456
Target:  5'- cGGGCAGUgggaGCGGgUACCgGCGCCgGGCGa -3'
miRNA:   3'- -CCCGUCA----CGUCgAUGG-CGUGGgCCGU- -5'
12992 5' -60.9 NC_003387.1 + 23303 0.75 0.09705
Target:  5'- cGGGCcGcUGCGGCgGCCuccuccuGCGCCCGGCGg -3'
miRNA:   3'- -CCCGuC-ACGUCGaUGG-------CGUGGGCCGU- -5'
12992 5' -60.9 NC_003387.1 + 48834 0.74 0.111713
Target:  5'- aGGGuCGG-GCAGCggcGCCGguUCCGGCAc -3'
miRNA:   3'- -CCC-GUCaCGUCGa--UGGCguGGGCCGU- -5'
12992 5' -60.9 NC_003387.1 + 49819 0.74 0.111713
Target:  5'- -cGCcc-GCGGcCUGCCGCGCCCGGCGa -3'
miRNA:   3'- ccCGucaCGUC-GAUGGCGUGGGCCGU- -5'
12992 5' -60.9 NC_003387.1 + 41168 0.74 0.121283
Target:  5'- aGGGCgAGUGCGGCcgGUCGCACCguuuCGGCGg -3'
miRNA:   3'- -CCCG-UCACGUCGa-UGGCGUGG----GCCGU- -5'
12992 5' -60.9 NC_003387.1 + 11267 0.73 0.124639
Target:  5'- gGGGCAGUcaggGCGGCgucaggGCCGCGCC-GGUg -3'
miRNA:   3'- -CCCGUCA----CGUCGa-----UGGCGUGGgCCGu -5'
12992 5' -60.9 NC_003387.1 + 28595 0.73 0.13161
Target:  5'- cGGGCAGgccggGaUAGCUGCCGaCGCCC-GCAu -3'
miRNA:   3'- -CCCGUCa----C-GUCGAUGGC-GUGGGcCGU- -5'
12992 5' -60.9 NC_003387.1 + 22048 0.73 0.13894
Target:  5'- uGGGCGGUGgCGGCgaucACCgGCACCguUGGCGa -3'
miRNA:   3'- -CCCGUCAC-GUCGa---UGG-CGUGG--GCCGU- -5'
12992 5' -60.9 NC_003387.1 + 33760 0.73 0.13894
Target:  5'- aGGGCAacgGCGGC-GCCGCgagcgguuugGCCCGGCu -3'
miRNA:   3'- -CCCGUca-CGUCGaUGGCG----------UGGGCCGu -5'
12992 5' -60.9 NC_003387.1 + 12946 0.73 0.142359
Target:  5'- cGGCAGUGCcacgucggcgucuGGCgGCUGUACCgGGCGg -3'
miRNA:   3'- cCCGUCACG-------------UCGaUGGCGUGGgCCGU- -5'
12992 5' -60.9 NC_003387.1 + 21690 0.72 0.146642
Target:  5'- cGGuGCcGUGCuGGCcGCCGC-CCCGGCGc -3'
miRNA:   3'- -CC-CGuCACG-UCGaUGGCGuGGGCCGU- -5'
12992 5' -60.9 NC_003387.1 + 31278 0.72 0.154318
Target:  5'- gGGGCcgGGUuaguugaccagccGUAGCUGCUGCGCCgGGCc -3'
miRNA:   3'- -CCCG--UCA-------------CGUCGAUGGCGUGGgCCGu -5'
12992 5' -60.9 NC_003387.1 + 13578 0.72 0.154732
Target:  5'- cGGGCAGgacGuCGGCUggucGCCGCAgUCUGGCAg -3'
miRNA:   3'- -CCCGUCa--C-GUCGA----UGGCGU-GGGCCGU- -5'
12992 5' -60.9 NC_003387.1 + 11092 0.72 0.154732
Target:  5'- aGGGC-GUGCAGCcGCuCGCgACCgGGCu -3'
miRNA:   3'- -CCCGuCACGUCGaUG-GCG-UGGgCCGu -5'
12992 5' -60.9 NC_003387.1 + 44923 0.72 0.158927
Target:  5'- aGGCGuUGCAGCUcgGCCuGCACCUcgGGCAg -3'
miRNA:   3'- cCCGUcACGUCGA--UGG-CGUGGG--CCGU- -5'
12992 5' -60.9 NC_003387.1 + 15563 0.72 0.163224
Target:  5'- cGGaGGUGCAGCcgauUCGCGCCUGGCu -3'
miRNA:   3'- cCCgUCACGUCGau--GGCGUGGGCCGu -5'
12992 5' -60.9 NC_003387.1 + 25863 0.72 0.163224
Target:  5'- aGGGUGGccUGCAGUUGCCGagcgGCCUGGUg -3'
miRNA:   3'- -CCCGUC--ACGUCGAUGGCg---UGGGCCGu -5'
12992 5' -60.9 NC_003387.1 + 22344 0.72 0.167626
Target:  5'- cGGCgccGGUGgGGCUgGCCcaggcGCACCCGGCGc -3'
miRNA:   3'- cCCG---UCACgUCGA-UGG-----CGUGGGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.