miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12992 5' -60.9 NC_003387.1 + 23233 0.69 0.253662
Target:  5'- cGGCuGUGguGCU-CgGCGCCCucgGGCAc -3'
miRNA:   3'- cCCGuCACguCGAuGgCGUGGG---CCGU- -5'
12992 5' -60.9 NC_003387.1 + 7345 0.7 0.223435
Target:  5'- cGGC--UGCGGCcgUACCGCACC-GGCAu -3'
miRNA:   3'- cCCGucACGUCG--AUGGCGUGGgCCGU- -5'
12992 5' -60.9 NC_003387.1 + 25863 0.72 0.163224
Target:  5'- aGGGUGGccUGCAGUUGCCGagcgGCCUGGUg -3'
miRNA:   3'- -CCCGUC--ACGUCGAUGGCg---UGGGCCGu -5'
12992 5' -60.9 NC_003387.1 + 49819 0.74 0.111713
Target:  5'- -cGCcc-GCGGcCUGCCGCGCCCGGCGa -3'
miRNA:   3'- ccCGucaCGUC-GAUGGCGUGGGCCGU- -5'
12992 5' -60.9 NC_003387.1 + 41788 0.67 0.331854
Target:  5'- cGGGCGcGUGCcGCgACCuggcgcaCGCCUGGCAg -3'
miRNA:   3'- -CCCGU-CACGuCGaUGGc------GUGGGCCGU- -5'
12992 5' -60.9 NC_003387.1 + 48043 0.68 0.273364
Target:  5'- cGGGCAcgGCAagcaguucacccGCUACCGCGCCCcgaaGCGc -3'
miRNA:   3'- -CCCGUcaCGU------------CGAUGGCGUGGGc---CGU- -5'
12992 5' -60.9 NC_003387.1 + 14923 0.7 0.212228
Target:  5'- cGGCuGcGCGGCUACCgGCGCagCGGCGc -3'
miRNA:   3'- cCCGuCaCGUCGAUGG-CGUGg-GCCGU- -5'
12992 5' -60.9 NC_003387.1 + 39221 0.78 0.060456
Target:  5'- cGGGCAGUgggaGCGGgUACCgGCGCCgGGCGa -3'
miRNA:   3'- -CCCGUCA----CGUCgAUGG-CGUGGgCCGU- -5'
12992 5' -60.9 NC_003387.1 + 28198 0.68 0.273364
Target:  5'- aGGGCGGcgaccUGCAGCUcggcaagcgcaGCCGCGa-CGGCu -3'
miRNA:   3'- -CCCGUC-----ACGUCGA-----------UGGCGUggGCCGu -5'
12992 5' -60.9 NC_003387.1 + 4295 0.78 0.05713
Target:  5'- cGGGCGa-GCAGCgcACCGCgACCCGGCAg -3'
miRNA:   3'- -CCCGUcaCGUCGa-UGGCG-UGGGCCGU- -5'
12992 5' -60.9 NC_003387.1 + 20637 0.7 0.21777
Target:  5'- cGGCGG-GCAaugUGCCGCuCCCGGCGa -3'
miRNA:   3'- cCCGUCaCGUcg-AUGGCGuGGGCCGU- -5'
12992 5' -60.9 NC_003387.1 + 37377 0.69 0.253662
Target:  5'- cGGGCg--GCGGCgccCCGCugUCGGUAu -3'
miRNA:   3'- -CCCGucaCGUCGau-GGCGugGGCCGU- -5'
12992 5' -60.9 NC_003387.1 + 17014 0.71 0.176749
Target:  5'- cGGGCGcuaaucaaaccGcgGCGGCUGCCGCccucGCCgGGCGu -3'
miRNA:   3'- -CCCGU-----------Ca-CGUCGAUGGCG----UGGgCCGU- -5'
12992 5' -60.9 NC_003387.1 + 15563 0.72 0.163224
Target:  5'- cGGaGGUGCAGCcgauUCGCGCCUGGCu -3'
miRNA:   3'- cCCgUCACGUCGau--GGCGUGGGCCGu -5'
12992 5' -60.9 NC_003387.1 + 12946 0.73 0.142359
Target:  5'- cGGCAGUGCcacgucggcgucuGGCgGCUGUACCgGGCGg -3'
miRNA:   3'- cCCGUCACG-------------UCGaUGGCGUGGgCCGU- -5'
12992 5' -60.9 NC_003387.1 + 41168 0.74 0.121283
Target:  5'- aGGGCgAGUGCGGCcgGUCGCACCguuuCGGCGg -3'
miRNA:   3'- -CCCG-UCACGUCGa-UGGCGUGG----GCCGU- -5'
12992 5' -60.9 NC_003387.1 + 21948 0.67 0.33978
Target:  5'- gGGGCGGcggcaggcgucUGCGGCgcuguucaacUACggUGCGCCCGGUg -3'
miRNA:   3'- -CCCGUC-----------ACGUCG----------AUG--GCGUGGGCCGu -5'
12992 5' -60.9 NC_003387.1 + 16331 0.67 0.33978
Target:  5'- -aGUGGUGUucGCUACUGagcaACCCGGCGc -3'
miRNA:   3'- ccCGUCACGu-CGAUGGCg---UGGGCCGU- -5'
12992 5' -60.9 NC_003387.1 + 12460 0.68 0.308895
Target:  5'- uGGCg--GCGGCcugGCCGCggGCCUGGCGu -3'
miRNA:   3'- cCCGucaCGUCGa--UGGCG--UGGGCCGU- -5'
12992 5' -60.9 NC_003387.1 + 37158 0.68 0.287169
Target:  5'- uGGGCGG-GCgcauggucaccgAGCUGgCG-GCCCGGCAc -3'
miRNA:   3'- -CCCGUCaCG------------UCGAUgGCgUGGGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.