miRNA display CGI


Results 41 - 60 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12993 5' -56.3 NC_003387.1 + 3482 0.67 0.556781
Target:  5'- cCCCGGcgucGAGCa-GCCGCUcGgCCGCCUc -3'
miRNA:   3'- -GGGUU----UUCGggCGGCGAuUgGGUGGA- -5'
12993 5' -56.3 NC_003387.1 + 42217 0.67 0.556781
Target:  5'- gCCGAgccGAGCgCC-CCGCUGAUCUugCUg -3'
miRNA:   3'- gGGUU---UUCG-GGcGGCGAUUGGGugGA- -5'
12993 5' -56.3 NC_003387.1 + 15573 0.67 0.556781
Target:  5'- aCCAugcGCCCGCCcaGCgaguGCCCaACCa -3'
miRNA:   3'- gGGUuuuCGGGCGG--CGau--UGGG-UGGa -5'
12993 5' -56.3 NC_003387.1 + 48785 0.67 0.556781
Target:  5'- gCC---AGCUCGCCGCUGA-UCGCCg -3'
miRNA:   3'- gGGuuuUCGGGCGGCGAUUgGGUGGa -5'
12993 5' -56.3 NC_003387.1 + 18957 0.67 0.555705
Target:  5'- gCCAAAcgcucgcGGCgCCGCCGUU-GCCCuuGCCg -3'
miRNA:   3'- gGGUUU-------UCG-GGCGGCGAuUGGG--UGGa -5'
12993 5' -56.3 NC_003387.1 + 5546 0.68 0.546048
Target:  5'- cCCCGAGGGCgaccaccagggCCaCCGCgguGCCCGCUa -3'
miRNA:   3'- -GGGUUUUCG-----------GGcGGCGau-UGGGUGGa -5'
12993 5' -56.3 NC_003387.1 + 30546 0.68 0.546048
Target:  5'- nCCGAua--CCGCCGCc--CCCGCCUg -3'
miRNA:   3'- gGGUUuucgGGCGGCGauuGGGUGGA- -5'
12993 5' -56.3 NC_003387.1 + 46805 0.68 0.546048
Target:  5'- uUCGAcGGCCCGCgcugCGUUAGCUCGCUg -3'
miRNA:   3'- gGGUUuUCGGGCG----GCGAUUGGGUGGa -5'
12993 5' -56.3 NC_003387.1 + 31507 0.68 0.546048
Target:  5'- gCCCugc-GCCCGCaCGCUGuUCCACg- -3'
miRNA:   3'- -GGGuuuuCGGGCG-GCGAUuGGGUGga -5'
12993 5' -56.3 NC_003387.1 + 27356 0.68 0.535382
Target:  5'- cCCCucGAcCUCGCCGCUcuuggcgcuggAACCCAUCg -3'
miRNA:   3'- -GGGuuUUcGGGCGGCGA-----------UUGGGUGGa -5'
12993 5' -56.3 NC_003387.1 + 44667 0.68 0.535382
Target:  5'- gCCGAGGGgCUGCCGgU-GCUCGCCa -3'
miRNA:   3'- gGGUUUUCgGGCGGCgAuUGGGUGGa -5'
12993 5' -56.3 NC_003387.1 + 5412 0.68 0.535382
Target:  5'- aCCGAaggcAAGCCCGCCGaggacAACUCgACCg -3'
miRNA:   3'- gGGUU----UUCGGGCGGCga---UUGGG-UGGa -5'
12993 5' -56.3 NC_003387.1 + 8107 0.68 0.52479
Target:  5'- gCCCGAgggcGAGCCCagcucguacgcGCUGCUGuCCCgGCCg -3'
miRNA:   3'- -GGGUU----UUCGGG-----------CGGCGAUuGGG-UGGa -5'
12993 5' -56.3 NC_003387.1 + 8017 0.68 0.52479
Target:  5'- gCCCucugucGGCCCGCUGgUGGCCgcgcgaGCCUa -3'
miRNA:   3'- -GGGuuu---UCGGGCGGCgAUUGGg-----UGGA- -5'
12993 5' -56.3 NC_003387.1 + 5904 0.68 0.52479
Target:  5'- -gCAGAAGCauugCGCCGCUuACgCGCCg -3'
miRNA:   3'- ggGUUUUCGg---GCGGCGAuUGgGUGGa -5'
12993 5' -56.3 NC_003387.1 + 34223 0.68 0.514279
Target:  5'- gCCCGAGAGCauGCUGCaGGCCCucggggcgcucgACCg -3'
miRNA:   3'- -GGGUUUUCGggCGGCGaUUGGG------------UGGa -5'
12993 5' -56.3 NC_003387.1 + 48155 0.68 0.513232
Target:  5'- gCCAccGAGGCCCGCgcggucgcgcaggCGCaGGCCCGCa- -3'
miRNA:   3'- gGGU--UUUCGGGCG-------------GCGaUUGGGUGga -5'
12993 5' -56.3 NC_003387.1 + 44383 0.68 0.510098
Target:  5'- aCCCGguggucgacgaggcGAAGCUCGCCGCggcugacgcUGugcucgcgaugcuGCCCGCCg -3'
miRNA:   3'- -GGGU--------------UUUCGGGCGGCG---------AU-------------UGGGUGGa -5'
12993 5' -56.3 NC_003387.1 + 1996 0.68 0.503854
Target:  5'- aCCAuuAGUggCCGUgaCGCUGGCCCugCUc -3'
miRNA:   3'- gGGUuuUCG--GGCG--GCGAUUGGGugGA- -5'
12993 5' -56.3 NC_003387.1 + 9964 0.68 0.493523
Target:  5'- aCCGAGGGCgcgcauaaaauCCGCCGCagGGCgCACCc -3'
miRNA:   3'- gGGUUUUCG-----------GGCGGCGa-UUGgGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.