miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12994 3' -54.2 NC_003387.1 + 11852 0.7 0.542186
Target:  5'- uCGCCgcggaAAUCCgaccacauugugUCGGuGAgcGCGUCGCGCa -3'
miRNA:   3'- -GCGGag---UUAGG------------AGCC-CU--UGCAGUGCG- -5'
12994 3' -54.2 NC_003387.1 + 45919 0.68 0.68409
Target:  5'- gCGCCUUGAgCCgcaGGGcgaccAUGUCGCGCu -3'
miRNA:   3'- -GCGGAGUUaGGag-CCCu----UGCAGUGCG- -5'
12994 3' -54.2 NC_003387.1 + 43319 0.68 0.662244
Target:  5'- gGCC-CAcUCCUCGGcGAuCGUCuuGCc -3'
miRNA:   3'- gCGGaGUuAGGAGCC-CUuGCAGugCG- -5'
12994 3' -54.2 NC_003387.1 + 43398 0.68 0.661148
Target:  5'- aCGaCgUCGA-CCUCGGGGGCcgugucaGUCGCGUu -3'
miRNA:   3'- -GC-GgAGUUaGGAGCCCUUG-------CAGUGCG- -5'
12994 3' -54.2 NC_003387.1 + 2976 0.69 0.640286
Target:  5'- gGCCUCG---CUCGGGGccucGCGagGCGCu -3'
miRNA:   3'- gCGGAGUuagGAGCCCU----UGCagUGCG- -5'
12994 3' -54.2 NC_003387.1 + 36843 0.69 0.629291
Target:  5'- uGuCCUC-GUCCUCGGGcagccacAUGUaCGCGCg -3'
miRNA:   3'- gC-GGAGuUAGGAGCCCu------UGCA-GUGCG- -5'
12994 3' -54.2 NC_003387.1 + 35523 0.69 0.629291
Target:  5'- uGCCUCGG-CCUCGGccACuuUCGCGCc -3'
miRNA:   3'- gCGGAGUUaGGAGCCcuUGc-AGUGCG- -5'
12994 3' -54.2 NC_003387.1 + 44849 0.7 0.577803
Target:  5'- cCGaCCUCAAggucggugccguagCCgUCGGGGGCGUCggcgauuccgccuGCGCg -3'
miRNA:   3'- -GC-GGAGUUa-------------GG-AGCCCUUGCAG-------------UGCG- -5'
12994 3' -54.2 NC_003387.1 + 51165 0.7 0.574541
Target:  5'- gCGCUUCGccGUCCUCGGGGccgaggucgaacAgGUCGUGCc -3'
miRNA:   3'- -GCGGAGU--UAGGAGCCCU------------UgCAGUGCG- -5'
12994 3' -54.2 NC_003387.1 + 31786 0.68 0.694944
Target:  5'- aCGCCgc---CCUCGGGAACGUaauagACGa -3'
miRNA:   3'- -GCGGaguuaGGAGCCCUUGCAg----UGCg -5'
12994 3' -54.2 NC_003387.1 + 23555 0.68 0.696026
Target:  5'- cCGuCCUCGAUCgUCGGGucggcgaaugccguUGUCAUGUc -3'
miRNA:   3'- -GC-GGAGUUAGgAGCCCuu------------GCAGUGCG- -5'
12994 3' -54.2 NC_003387.1 + 19124 0.67 0.727097
Target:  5'- uGCCaCA--CCUcggCGGGAucuuCGUCGCGCa -3'
miRNA:   3'- gCGGaGUuaGGA---GCCCUu---GCAGUGCG- -5'
12994 3' -54.2 NC_003387.1 + 34588 0.66 0.778641
Target:  5'- cCGCCUUGAggugCC-CGGuGAcguacgGCGUcCACGCa -3'
miRNA:   3'- -GCGGAGUUa---GGaGCC-CU------UGCA-GUGCG- -5'
12994 3' -54.2 NC_003387.1 + 20460 0.66 0.778641
Target:  5'- aCGCCUUGucggCCUCGGcGACGgcCAgGCg -3'
miRNA:   3'- -GCGGAGUua--GGAGCCcUUGCa-GUgCG- -5'
12994 3' -54.2 NC_003387.1 + 18135 0.66 0.768589
Target:  5'- cCGCCUCGuUCCaccgCGGGuaaccCGUCAUcgGCc -3'
miRNA:   3'- -GCGGAGUuAGGa---GCCCuu---GCAGUG--CG- -5'
12994 3' -54.2 NC_003387.1 + 39674 0.66 0.768589
Target:  5'- uGuCCUCGAUagCCUUGucGGCGUUGCGCa -3'
miRNA:   3'- gC-GGAGUUA--GGAGCccUUGCAGUGCG- -5'
12994 3' -54.2 NC_003387.1 + 40505 0.66 0.767577
Target:  5'- aCGCCggggCAcgCCgggaaugUCGGGAACGgugaACGUc -3'
miRNA:   3'- -GCGGa---GUuaGG-------AGCCCUUGCag--UGCG- -5'
12994 3' -54.2 NC_003387.1 + 11333 0.67 0.748078
Target:  5'- gCGCCUCGGUCgCcCGGcGcuCGgccUCACGCu -3'
miRNA:   3'- -GCGGAGUUAG-GaGCC-CuuGC---AGUGCG- -5'
12994 3' -54.2 NC_003387.1 + 20811 0.67 0.73764
Target:  5'- aGCCaccgcUCGGagCagGGGAuACGUCGCGCg -3'
miRNA:   3'- gCGG-----AGUUagGagCCCU-UGCAGUGCG- -5'
12994 3' -54.2 NC_003387.1 + 3506 0.67 0.734488
Target:  5'- cCGCCUCGAccggcagaUCCguugCGGGcucagcAACGUCgacggccgccgccuGCGCg -3'
miRNA:   3'- -GCGGAGUU--------AGGa---GCCC------UUGCAG--------------UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.