miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12994 5' -61.1 NC_003387.1 + 49753 0.66 0.414452
Target:  5'- uCGGCcuuGCuGCCGGUccacCCGCUGAUCa -3'
miRNA:   3'- -GCCG---CGuCGGUCGagc-GGCGACUAGc -5'
12994 5' -61.1 NC_003387.1 + 27935 0.66 0.414452
Target:  5'- uCGGCcgcgacccgaGCGGuuCCGGCUCGUgGC-GAUCGa -3'
miRNA:   3'- -GCCG----------CGUC--GGUCGAGCGgCGaCUAGC- -5'
12994 5' -61.1 NC_003387.1 + 193 0.66 0.414452
Target:  5'- cCGGC-C-GCCAGCUCGgCgGCUuGUCGc -3'
miRNA:   3'- -GCCGcGuCGGUCGAGC-GgCGAcUAGC- -5'
12994 5' -61.1 NC_003387.1 + 20511 0.66 0.414452
Target:  5'- -nGCGCAGCgCGGCgUCGC-GCUcGUCGg -3'
miRNA:   3'- gcCGCGUCG-GUCG-AGCGgCGAcUAGC- -5'
12994 5' -61.1 NC_003387.1 + 25314 0.66 0.414452
Target:  5'- gCGGUGguGCCAGCgcgCGUCGUa----- -3'
miRNA:   3'- -GCCGCguCGGUCGa--GCGGCGacuagc -5'
12994 5' -61.1 NC_003387.1 + 48607 0.66 0.409024
Target:  5'- aGcGCGguGUCGGCcgacuuguacacggCGCCGCgGGUCGc -3'
miRNA:   3'- gC-CGCguCGGUCGa-------------GCGGCGaCUAGC- -5'
12994 5' -61.1 NC_003387.1 + 37256 0.66 0.40543
Target:  5'- cCGuGCGCAGaCCAucCUCGCCGCgcuUCa -3'
miRNA:   3'- -GC-CGCGUC-GGUc-GAGCGGCGacuAGc -5'
12994 5' -61.1 NC_003387.1 + 21471 0.66 0.40543
Target:  5'- uGGCGCAGCCcGCgccggucggGCCggGCUGGUUc -3'
miRNA:   3'- gCCGCGUCGGuCGag-------CGG--CGACUAGc -5'
12994 5' -61.1 NC_003387.1 + 46815 0.66 0.40543
Target:  5'- -cGCGCugcGUUAGCUCGCUGCcggugcacGAUCGg -3'
miRNA:   3'- gcCGCGu--CGGUCGAGCGGCGa-------CUAGC- -5'
12994 5' -61.1 NC_003387.1 + 48367 0.66 0.40543
Target:  5'- uCGGCGUcgAGCCAG-UCGCuuacguugCGCUGGUgCGc -3'
miRNA:   3'- -GCCGCG--UCGGUCgAGCG--------GCGACUA-GC- -5'
12994 5' -61.1 NC_003387.1 + 21582 0.66 0.404535
Target:  5'- aGGCGCgcggcaucagcgaGGCCGacGCggCGCUGCUGGUg- -3'
miRNA:   3'- gCCGCG-------------UCGGU--CGa-GCGGCGACUAgc -5'
12994 5' -61.1 NC_003387.1 + 15539 0.66 0.396533
Target:  5'- uCGGCGCAacGCCuuucAGCcCGCCGgaGGUg- -3'
miRNA:   3'- -GCCGCGU--CGG----UCGaGCGGCgaCUAgc -5'
12994 5' -61.1 NC_003387.1 + 33732 0.66 0.396533
Target:  5'- aGGCccacGCcGCCAGCUCGUCGaUGcUCGc -3'
miRNA:   3'- gCCG----CGuCGGUCGAGCGGCgACuAGC- -5'
12994 5' -61.1 NC_003387.1 + 257 0.66 0.396533
Target:  5'- aGcGUGCAguGCCcuGGCUgCGCCGCgccGGUCGa -3'
miRNA:   3'- gC-CGCGU--CGG--UCGA-GCGGCGa--CUAGC- -5'
12994 5' -61.1 NC_003387.1 + 48252 0.66 0.396533
Target:  5'- uCGGcCGCGGCCAGCa-GCUcggGCUGuUCu -3'
miRNA:   3'- -GCC-GCGUCGGUCGagCGG---CGACuAGc -5'
12994 5' -61.1 NC_003387.1 + 50671 0.66 0.396533
Target:  5'- uGGCGCcgccaccgcGGCCAGCUCGgCGaCggcgGccGUCGg -3'
miRNA:   3'- gCCGCG---------UCGGUCGAGCgGC-Ga---C--UAGC- -5'
12994 5' -61.1 NC_003387.1 + 35708 0.66 0.396533
Target:  5'- aCGGCGacgaCGGCcUGCCGCUGAcCGa -3'
miRNA:   3'- -GCCGCgucgGUCGaGCGGCGACUaGC- -5'
12994 5' -61.1 NC_003387.1 + 50776 0.66 0.39565
Target:  5'- cCGGCcagacccGCGGCCGGaucaugCGCUGCacGAUCGa -3'
miRNA:   3'- -GCCG-------CGUCGGUCga----GCGGCGa-CUAGC- -5'
12994 5' -61.1 NC_003387.1 + 16928 0.66 0.387762
Target:  5'- aCGGCGCcgaGGCaCAGCUCGgggcugcaugCGCUGuGUCGc -3'
miRNA:   3'- -GCCGCG---UCG-GUCGAGCg---------GCGAC-UAGC- -5'
12994 5' -61.1 NC_003387.1 + 31056 0.66 0.387762
Target:  5'- uCGGCGaacacgugcuCGGCC-GC-CGCCGC-GGUCGa -3'
miRNA:   3'- -GCCGC----------GUCGGuCGaGCGGCGaCUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.