miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12996 3' -50.5 NC_003387.1 + 26433 0.66 0.901124
Target:  5'- aCCGAcGAG-CAGCucACGCCgUGGa -3'
miRNA:   3'- cGGCUuUUCaGUCGuuUGCGGgACUc -5'
12996 3' -50.5 NC_003387.1 + 28130 0.67 0.893858
Target:  5'- cGCCGA--GGcCcGCAAGCGCCCc--- -3'
miRNA:   3'- -CGGCUuuUCaGuCGUUUGCGGGacuc -5'
12996 3' -50.5 NC_003387.1 + 45662 0.67 0.878472
Target:  5'- cGCCGAAGguguccGGUCagGGCGAGCGgCC-GGGc -3'
miRNA:   3'- -CGGCUUU------UCAG--UCGUUUGCgGGaCUC- -5'
12996 3' -50.5 NC_003387.1 + 30010 0.66 0.927245
Target:  5'- cCCGAcuGGUCGGUAu-CGCCCa--- -3'
miRNA:   3'- cGGCUuuUCAGUCGUuuGCGGGacuc -5'
12996 3' -50.5 NC_003387.1 + 45379 0.66 0.901124
Target:  5'- uGCCGGc-GGUUAGCu-GCGCCCg--- -3'
miRNA:   3'- -CGGCUuuUCAGUCGuuUGCGGGacuc -5'
12996 3' -50.5 NC_003387.1 + 29249 0.67 0.873639
Target:  5'- gGCCGAcAAGGUCgagcaguacgaGGCGauggcaacccgcaucGACGCCCUGu- -3'
miRNA:   3'- -CGGCU-UUUCAG-----------UCGU---------------UUGCGGGACuc -5'
12996 3' -50.5 NC_003387.1 + 7522 0.66 0.927245
Target:  5'- gGCCGAgggugaacgAGAG-CGGCAcugcugcCGCCCUGGc -3'
miRNA:   3'- -CGGCU---------UUUCaGUCGUuu-----GCGGGACUc -5'
12996 3' -50.5 NC_003387.1 + 7441 0.67 0.870363
Target:  5'- aCCGAgugAAGGUCGGCGAgaACGCgaUGGGc -3'
miRNA:   3'- cGGCU---UUUCAGUCGUU--UGCGggACUC- -5'
12996 3' -50.5 NC_003387.1 + 2578 0.66 0.908099
Target:  5'- cGCCGAcccGUCGGUcGACGCCUg--- -3'
miRNA:   3'- -CGGCUuuuCAGUCGuUUGCGGGacuc -5'
12996 3' -50.5 NC_003387.1 + 2374 0.67 0.870363
Target:  5'- cUUGAGcguGGUCGGCuaccgcAACGCCCUGGc -3'
miRNA:   3'- cGGCUUu--UCAGUCGu-----UUGCGGGACUc -5'
12996 3' -50.5 NC_003387.1 + 9412 0.67 0.896799
Target:  5'- cGCCGAGGAGUgGGCcgacgaguacgacgcGGGCGCCgaGc- -3'
miRNA:   3'- -CGGCUUUUCAgUCG---------------UUUGCGGgaCuc -5'
12996 3' -50.5 NC_003387.1 + 2168 0.67 0.893858
Target:  5'- aGCCGc-GAG-CAGCucGGCGCCUUGGu -3'
miRNA:   3'- -CGGCuuUUCaGUCGu-UUGCGGGACUc -5'
12996 3' -50.5 NC_003387.1 + 32533 0.67 0.886305
Target:  5'- gGCCGugcGAGgcgCAGCAGcgcaucaaccGCGCCCUcGAc -3'
miRNA:   3'- -CGGCuu-UUCa--GUCGUU----------UGCGGGA-CUc -5'
12996 3' -50.5 NC_003387.1 + 1581 0.75 0.475782
Target:  5'- cGUCGuGAAAGUCAGac-GCGCCCUGGc -3'
miRNA:   3'- -CGGC-UUUUCAGUCguuUGCGGGACUc -5'
12996 3' -50.5 NC_003387.1 + 33888 0.75 0.444714
Target:  5'- gGUCGAugcccGUCAGCAucuuGAUGCCCUGAa -3'
miRNA:   3'- -CGGCUuuu--CAGUCGU----UUGCGGGACUc -5'
12996 3' -50.5 NC_003387.1 + 34066 0.67 0.886305
Target:  5'- cUCGAAAucGGUUAGCGGGCGgCC-GAGu -3'
miRNA:   3'- cGGCUUU--UCAGUCGUUUGCgGGaCUC- -5'
12996 3' -50.5 NC_003387.1 + 6623 0.75 0.444714
Target:  5'- aGCCGGAAcauGUCGGCGGcCGUCUUGGGc -3'
miRNA:   3'- -CGGCUUUu--CAGUCGUUuGCGGGACUC- -5'
12996 3' -50.5 NC_003387.1 + 44281 0.68 0.835338
Target:  5'- cGCCGc-AGGUCAGCGggUGUgCUcGAGu -3'
miRNA:   3'- -CGGCuuUUCAGUCGUuuGCGgGA-CUC- -5'
12996 3' -50.5 NC_003387.1 + 11546 0.68 0.835338
Target:  5'- cGCCGAAAcGGUgcgacCGGCcgcacuCGCCCUGAc -3'
miRNA:   3'- -CGGCUUU-UCA-----GUCGuuu---GCGGGACUc -5'
12996 3' -50.5 NC_003387.1 + 49112 0.68 0.835338
Target:  5'- cCCGcucAGcUCGGCcaGGACGCCCUGAa -3'
miRNA:   3'- cGGCuuuUC-AGUCG--UUUGCGGGACUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.