miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12997 5' -55.6 NC_003387.1 + 34515 0.74 0.285624
Target:  5'- uCGCC-GGUCGuCGcGUCGCCGagGCGCAc -3'
miRNA:   3'- -GCGGaCCAGU-GC-UAGCGGCaaUGCGU- -5'
12997 5' -55.6 NC_003387.1 + 12318 0.66 0.680678
Target:  5'- uCGCCgacguaGGUCACGugcagcUCGCCGccgACGUc -3'
miRNA:   3'- -GCGGa-----CCAGUGCu-----AGCGGCaa-UGCGu -5'
12997 5' -55.6 NC_003387.1 + 25994 0.7 0.476896
Target:  5'- uCGCCggGGUCGCGAUCcaGCuCGcgccGCGCAc -3'
miRNA:   3'- -GCGGa-CCAGUGCUAG--CG-GCaa--UGCGU- -5'
12997 5' -55.6 NC_003387.1 + 50279 0.7 0.466847
Target:  5'- gGCCUGGcgCGCGuccaUGCgGUUGCGCu -3'
miRNA:   3'- gCGGACCa-GUGCua--GCGgCAAUGCGu -5'
12997 5' -55.6 NC_003387.1 + 335 0.66 0.691518
Target:  5'- gGCCUGGUaguCGAuuggcUCGCCGcaaACGUg -3'
miRNA:   3'- gCGGACCAgu-GCU-----AGCGGCaa-UGCGu -5'
12997 5' -55.6 NC_003387.1 + 41157 0.66 0.680678
Target:  5'- aCGCCuUGGUgC-CGAUCGCCac--CGCAg -3'
miRNA:   3'- -GCGG-ACCA-GuGCUAGCGGcaauGCGU- -5'
12997 5' -55.6 NC_003387.1 + 40376 0.67 0.658871
Target:  5'- gGCgUUGGUgAUGAacUCGCCGUuagcgaUACGCGc -3'
miRNA:   3'- gCG-GACCAgUGCU--AGCGGCA------AUGCGU- -5'
12997 5' -55.6 NC_003387.1 + 18691 0.67 0.658871
Target:  5'- aCGCCgaccaggugcgGGUCGCGcagCGCCaggGCGCGg -3'
miRNA:   3'- -GCGGa----------CCAGUGCua-GCGGcaaUGCGU- -5'
12997 5' -55.6 NC_003387.1 + 3755 0.67 0.647926
Target:  5'- uGCCcGcGUgCACGAUCGCCagcucACGCAg -3'
miRNA:   3'- gCGGaC-CA-GUGCUAGCGGcaa--UGCGU- -5'
12997 5' -55.6 NC_003387.1 + 14520 0.67 0.643543
Target:  5'- gCGCCUGcGU-GCGGUacucggcggccggGCCGUUGCGCu -3'
miRNA:   3'- -GCGGAC-CAgUGCUAg------------CGGCAAUGCGu -5'
12997 5' -55.6 NC_003387.1 + 47265 0.67 0.615043
Target:  5'- uGcCCUGGUCACcgcuuuGGcCGCCGUcgGCGCc -3'
miRNA:   3'- gC-GGACCAGUG------CUaGCGGCAa-UGCGu -5'
12997 5' -55.6 NC_003387.1 + 24177 0.68 0.593179
Target:  5'- cCGCCUcGGUCGCccaauuGUCGCCGggcUugGUg -3'
miRNA:   3'- -GCGGA-CCAGUGc-----UAGCGGCa--AugCGu -5'
12997 5' -55.6 NC_003387.1 + 23413 0.68 0.560647
Target:  5'- gGCCUGGcgcucgugccCGCGGUCGCCGgggaacaggGCGUc -3'
miRNA:   3'- gCGGACCa---------GUGCUAGCGGCaa-------UGCGu -5'
12997 5' -55.6 NC_003387.1 + 45108 0.68 0.549907
Target:  5'- gCGCaucGGUCACuuGGUCGCCGU-GCGUc -3'
miRNA:   3'- -GCGga-CCAGUG--CUAGCGGCAaUGCGu -5'
12997 5' -55.6 NC_003387.1 + 43952 0.69 0.539231
Target:  5'- gGUCUGGUCGuCGAUCuugaCgGUUACGCc -3'
miRNA:   3'- gCGGACCAGU-GCUAGc---GgCAAUGCGu -5'
12997 5' -55.6 NC_003387.1 + 23082 0.69 0.5181
Target:  5'- aGCC-GGUUACucgCGCCGUcGCGCGu -3'
miRNA:   3'- gCGGaCCAGUGcuaGCGGCAaUGCGU- -5'
12997 5' -55.6 NC_003387.1 + 48424 0.69 0.507658
Target:  5'- uGCCgGGUCGCGGUgCGCUGcu-CGCc -3'
miRNA:   3'- gCGGaCCAGUGCUA-GCGGCaauGCGu -5'
12997 5' -55.6 NC_003387.1 + 46382 0.69 0.507658
Target:  5'- gGCCUGGUCGagcuucuugcCGAUCGCCuggcCGCc -3'
miRNA:   3'- gCGGACCAGU----------GCUAGCGGcaauGCGu -5'
12997 5' -55.6 NC_003387.1 + 18329 0.69 0.497307
Target:  5'- uCGUcgCUGGUCGCGccguuuccguuGUCGCCGUUGgGUu -3'
miRNA:   3'- -GCG--GACCAGUGC-----------UAGCGGCAAUgCGu -5'
12997 5' -55.6 NC_003387.1 + 11675 0.69 0.487051
Target:  5'- gGCCUcGGcgaUCGCGugggugucaauGUCGCCGUcgACGCAg -3'
miRNA:   3'- gCGGA-CC---AGUGC-----------UAGCGGCAa-UGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.