Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12997 | 5' | -55.6 | NC_003387.1 | + | 50121 | 1.09 | 0.000976 |
Target: 5'- gCGCCUGGUCACGAUCGCCGUUACGCAg -3' miRNA: 3'- -GCGGACCAGUGCUAGCGGCAAUGCGU- -5' |
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12997 | 5' | -55.6 | NC_003387.1 | + | 37080 | 0.68 | 0.560647 |
Target: 5'- uCGCCgacaUGGUCGaccUCGCCGU-GCGCGc -3' miRNA: 3'- -GCGG----ACCAGUgcuAGCGGCAaUGCGU- -5' |
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12997 | 5' | -55.6 | NC_003387.1 | + | 37790 | 0.68 | 0.549907 |
Target: 5'- gCGCCUGGgcgcagcaccCGCGGUCGCagcaGCGCGc -3' miRNA: 3'- -GCGGACCa---------GUGCUAGCGgcaaUGCGU- -5' |
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12997 | 5' | -55.6 | NC_003387.1 | + | 31001 | 0.68 | 0.549907 |
Target: 5'- gGCCgaGGUCAgGAUCggGCCGagcgUGCGCc -3' miRNA: 3'- gCGGa-CCAGUgCUAG--CGGCa---AUGCGu -5' |
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12997 | 5' | -55.6 | NC_003387.1 | + | 10751 | 0.69 | 0.487051 |
Target: 5'- cCGCUgacacGGcCGCGAUCGCCGgUACGa- -3' miRNA: 3'- -GCGGa----CCaGUGCUAGCGGCaAUGCgu -5' |
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12997 | 5' | -55.6 | NC_003387.1 | + | 13660 | 0.69 | 0.487051 |
Target: 5'- gGCUcGGUCGcCGAgggCGCCGUcgACGCu -3' miRNA: 3'- gCGGaCCAGU-GCUa--GCGGCAa-UGCGu -5' |
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12997 | 5' | -55.6 | NC_003387.1 | + | 10588 | 0.66 | 0.710879 |
Target: 5'- uCGCUUGGcaaugaggccagCACGGUCGCCucgGUcAUGCAg -3' miRNA: 3'- -GCGGACCa-----------GUGCUAGCGG---CAaUGCGU- -5' |
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12997 | 5' | -55.6 | NC_003387.1 | + | 48718 | 0.66 | 0.691518 |
Target: 5'- gGCCUGG-C-UGAUCGCCGccACGg- -3' miRNA: 3'- gCGGACCaGuGCUAGCGGCaaUGCgu -5' |
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12997 | 5' | -55.6 | NC_003387.1 | + | 44962 | 0.67 | 0.626001 |
Target: 5'- gGCCgcggcucaGGcCGCGAUCGCCGcUGcCGCc -3' miRNA: 3'- gCGGa-------CCaGUGCUAGCGGCaAU-GCGu -5' |
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12997 | 5' | -55.6 | NC_003387.1 | + | 26121 | 0.68 | 0.549907 |
Target: 5'- gCGCCaGGUCggcGCGuccGUCGCCGcucGCGCGg -3' miRNA: 3'- -GCGGaCCAG---UGC---UAGCGGCaa-UGCGU- -5' |
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12997 | 5' | -55.6 | NC_003387.1 | + | 21723 | 0.69 | 0.497307 |
Target: 5'- cCGaCCUGGUCGUGGaaaucgUCGCCGagGCGCu -3' miRNA: 3'- -GC-GGACCAGUGCU------AGCGGCaaUGCGu -5' |
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12997 | 5' | -55.6 | NC_003387.1 | + | 37286 | 0.72 | 0.339248 |
Target: 5'- gCGCCUGG-CGCGcUCGUCG--GCGCGg -3' miRNA: 3'- -GCGGACCaGUGCuAGCGGCaaUGCGU- -5' |
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12997 | 5' | -55.6 | NC_003387.1 | + | 27270 | 0.67 | 0.658871 |
Target: 5'- uGCCUGGUCGCGcgaggagaaCGCCGcacugGCGg- -3' miRNA: 3'- gCGGACCAGUGCua-------GCGGCaa---UGCgu -5' |
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12997 | 5' | -55.6 | NC_003387.1 | + | 42016 | 0.71 | 0.418339 |
Target: 5'- cCGCCUGGcCgugAUGGUCGCCGa-GCGCc -3' miRNA: 3'- -GCGGACCaG---UGCUAGCGGCaaUGCGu -5' |
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12997 | 5' | -55.6 | NC_003387.1 | + | 3988 | 0.68 | 0.549907 |
Target: 5'- cCGCg-GGUCAUGGacUCGUCGcgGCGCAc -3' miRNA: 3'- -GCGgaCCAGUGCU--AGCGGCaaUGCGU- -5' |
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12997 | 5' | -55.6 | NC_003387.1 | + | 10469 | 0.67 | 0.658871 |
Target: 5'- uCGCCggUGGcaUgGCGAUCGCCaaggUugGCAg -3' miRNA: 3'- -GCGG--ACC--AgUGCUAGCGGca--AugCGU- -5' |
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12997 | 5' | -55.6 | NC_003387.1 | + | 4061 | 0.66 | 0.713016 |
Target: 5'- aCGCCUcGGUCACGGcgugcggguUCuGCCGcaugcuCGCGa -3' miRNA: 3'- -GCGGA-CCAGUGCU---------AG-CGGCaau---GCGU- -5' |
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12997 | 5' | -55.6 | NC_003387.1 | + | 7818 | 0.71 | 0.427797 |
Target: 5'- aCGCCUGG-CGgccgaGGUCGcCCGgcGCGCAg -3' miRNA: 3'- -GCGGACCaGUg----CUAGC-GGCaaUGCGU- -5' |
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12997 | 5' | -55.6 | NC_003387.1 | + | 37993 | 0.68 | 0.571445 |
Target: 5'- aCGCCUGGcugCGCGAccgcagcaaGCCGUgcacCGCAa -3' miRNA: 3'- -GCGGACCa--GUGCUag-------CGGCAau--GCGU- -5' |
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12997 | 5' | -55.6 | NC_003387.1 | + | 23413 | 0.68 | 0.560647 |
Target: 5'- gGCCUGGcgcucgugccCGCGGUCGCCGgggaacaggGCGUc -3' miRNA: 3'- gCGGACCa---------GUGCUAGCGGCaa-------UGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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