miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12997 5' -55.6 NC_003387.1 + 335 0.66 0.691518
Target:  5'- gGCCUGGUaguCGAuuggcUCGCCGcaaACGUg -3'
miRNA:   3'- gCGGACCAgu-GCU-----AGCGGCaa-UGCGu -5'
12997 5' -55.6 NC_003387.1 + 3755 0.67 0.647926
Target:  5'- uGCCcGcGUgCACGAUCGCCagcucACGCAg -3'
miRNA:   3'- gCGGaC-CA-GUGCUAGCGGcaa--UGCGU- -5'
12997 5' -55.6 NC_003387.1 + 3988 0.68 0.549907
Target:  5'- cCGCg-GGUCAUGGacUCGUCGcgGCGCAc -3'
miRNA:   3'- -GCGgaCCAGUGCU--AGCGGCaaUGCGU- -5'
12997 5' -55.6 NC_003387.1 + 4061 0.66 0.713016
Target:  5'- aCGCCUcGGUCACGGcgugcggguUCuGCCGcaugcuCGCGa -3'
miRNA:   3'- -GCGGA-CCAGUGCU---------AG-CGGCaau---GCGU- -5'
12997 5' -55.6 NC_003387.1 + 6188 0.66 0.669792
Target:  5'- gGCCUuacuGGUCACGc-CGCCGUUgGUGCAg -3'
miRNA:   3'- gCGGA----CCAGUGCuaGCGGCAA-UGCGU- -5'
12997 5' -55.6 NC_003387.1 + 7818 0.71 0.427797
Target:  5'- aCGCCUGG-CGgccgaGGUCGcCCGgcGCGCAg -3'
miRNA:   3'- -GCGGACCaGUg----CUAGC-GGCaaUGCGU- -5'
12997 5' -55.6 NC_003387.1 + 10469 0.67 0.658871
Target:  5'- uCGCCggUGGcaUgGCGAUCGCCaaggUugGCAg -3'
miRNA:   3'- -GCGG--ACC--AgUGCUAGCGGca--AugCGU- -5'
12997 5' -55.6 NC_003387.1 + 10588 0.66 0.710879
Target:  5'- uCGCUUGGcaaugaggccagCACGGUCGCCucgGUcAUGCAg -3'
miRNA:   3'- -GCGGACCa-----------GUGCUAGCGG---CAaUGCGU- -5'
12997 5' -55.6 NC_003387.1 + 10751 0.69 0.487051
Target:  5'- cCGCUgacacGGcCGCGAUCGCCGgUACGa- -3'
miRNA:   3'- -GCGGa----CCaGUGCUAGCGGCaAUGCgu -5'
12997 5' -55.6 NC_003387.1 + 11675 0.69 0.487051
Target:  5'- gGCCUcGGcgaUCGCGugggugucaauGUCGCCGUcgACGCAg -3'
miRNA:   3'- gCGGA-CC---AGUGC-----------UAGCGGCAa-UGCGU- -5'
12997 5' -55.6 NC_003387.1 + 12318 0.66 0.680678
Target:  5'- uCGCCgacguaGGUCACGugcagcUCGCCGccgACGUc -3'
miRNA:   3'- -GCGGa-----CCAGUGCu-----AGCGGCaa-UGCGu -5'
12997 5' -55.6 NC_003387.1 + 13660 0.69 0.487051
Target:  5'- gGCUcGGUCGcCGAgggCGCCGUcgACGCu -3'
miRNA:   3'- gCGGaCCAGU-GCUa--GCGGCAa-UGCGu -5'
12997 5' -55.6 NC_003387.1 + 14520 0.67 0.643543
Target:  5'- gCGCCUGcGU-GCGGUacucggcggccggGCCGUUGCGCu -3'
miRNA:   3'- -GCGGAC-CAgUGCUAg------------CGGCAAUGCGu -5'
12997 5' -55.6 NC_003387.1 + 18329 0.69 0.497307
Target:  5'- uCGUcgCUGGUCGCGccguuuccguuGUCGCCGUUGgGUu -3'
miRNA:   3'- -GCG--GACCAGUGC-----------UAGCGGCAAUgCGu -5'
12997 5' -55.6 NC_003387.1 + 18691 0.67 0.658871
Target:  5'- aCGCCgaccaggugcgGGUCGCGcagCGCCaggGCGCGg -3'
miRNA:   3'- -GCGGa----------CCAGUGCua-GCGGcaaUGCGU- -5'
12997 5' -55.6 NC_003387.1 + 21723 0.69 0.497307
Target:  5'- cCGaCCUGGUCGUGGaaaucgUCGCCGagGCGCu -3'
miRNA:   3'- -GC-GGACCAGUGCU------AGCGGCaaUGCGu -5'
12997 5' -55.6 NC_003387.1 + 23082 0.69 0.5181
Target:  5'- aGCC-GGUUACucgCGCCGUcGCGCGu -3'
miRNA:   3'- gCGGaCCAGUGcuaGCGGCAaUGCGU- -5'
12997 5' -55.6 NC_003387.1 + 23360 0.66 0.691518
Target:  5'- gCGCCgcugacGGUCA-GGUCGCCGaggaugaaGCGCGc -3'
miRNA:   3'- -GCGGa-----CCAGUgCUAGCGGCaa------UGCGU- -5'
12997 5' -55.6 NC_003387.1 + 23413 0.68 0.560647
Target:  5'- gGCCUGGcgcucgugccCGCGGUCGCCGgggaacaggGCGUc -3'
miRNA:   3'- gCGGACCa---------GUGCUAGCGGCaa-------UGCGu -5'
12997 5' -55.6 NC_003387.1 + 24177 0.68 0.593179
Target:  5'- cCGCCUcGGUCGCccaauuGUCGCCGggcUugGUg -3'
miRNA:   3'- -GCGGA-CCAGUGc-----UAGCGGCa--AugCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.