miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12997 5' -55.6 NC_003387.1 + 50121 1.09 0.000976
Target:  5'- gCGCCUGGUCACGAUCGCCGUUACGCAg -3'
miRNA:   3'- -GCGGACCAGUGCUAGCGGCAAUGCGU- -5'
12997 5' -55.6 NC_003387.1 + 34515 0.74 0.285624
Target:  5'- uCGCC-GGUCGuCGcGUCGCCGagGCGCAc -3'
miRNA:   3'- -GCGGaCCAGU-GC-UAGCGGCaaUGCGU- -5'
12997 5' -55.6 NC_003387.1 + 37286 0.72 0.339248
Target:  5'- gCGCCUGG-CGCGcUCGUCG--GCGCGg -3'
miRNA:   3'- -GCGGACCaGUGCuAGCGGCaaUGCGU- -5'
12997 5' -55.6 NC_003387.1 + 31159 0.71 0.418339
Target:  5'- gCGCCUGGgcCACGGUCuGCaCGacgACGCGg -3'
miRNA:   3'- -GCGGACCa-GUGCUAG-CG-GCaa-UGCGU- -5'
12997 5' -55.6 NC_003387.1 + 42016 0.71 0.418339
Target:  5'- cCGCCUGGcCgugAUGGUCGCCGa-GCGCc -3'
miRNA:   3'- -GCGGACCaG---UGCUAGCGGCaaUGCGu -5'
12997 5' -55.6 NC_003387.1 + 7818 0.71 0.427797
Target:  5'- aCGCCUGG-CGgccgaGGUCGcCCGgcGCGCAg -3'
miRNA:   3'- -GCGGACCaGUg----CUAGC-GGCaaUGCGU- -5'
12997 5' -55.6 NC_003387.1 + 50279 0.7 0.466847
Target:  5'- gGCCUGGcgCGCGuccaUGCgGUUGCGCu -3'
miRNA:   3'- gCGGACCa-GUGCua--GCGgCAAUGCGu -5'
12997 5' -55.6 NC_003387.1 + 25994 0.7 0.476896
Target:  5'- uCGCCggGGUCGCGAUCcaGCuCGcgccGCGCAc -3'
miRNA:   3'- -GCGGa-CCAGUGCUAG--CG-GCaa--UGCGU- -5'
12997 5' -55.6 NC_003387.1 + 11675 0.69 0.487051
Target:  5'- gGCCUcGGcgaUCGCGugggugucaauGUCGCCGUcgACGCAg -3'
miRNA:   3'- gCGGA-CC---AGUGC-----------UAGCGGCAa-UGCGU- -5'
12997 5' -55.6 NC_003387.1 + 10751 0.69 0.487051
Target:  5'- cCGCUgacacGGcCGCGAUCGCCGgUACGa- -3'
miRNA:   3'- -GCGGa----CCaGUGCUAGCGGCaAUGCgu -5'
12997 5' -55.6 NC_003387.1 + 13660 0.69 0.487051
Target:  5'- gGCUcGGUCGcCGAgggCGCCGUcgACGCu -3'
miRNA:   3'- gCGGaCCAGU-GCUa--GCGGCAa-UGCGu -5'
12997 5' -55.6 NC_003387.1 + 18329 0.69 0.497307
Target:  5'- uCGUcgCUGGUCGCGccguuuccguuGUCGCCGUUGgGUu -3'
miRNA:   3'- -GCG--GACCAGUGC-----------UAGCGGCAAUgCGu -5'
12997 5' -55.6 NC_003387.1 + 21723 0.69 0.497307
Target:  5'- cCGaCCUGGUCGUGGaaaucgUCGCCGagGCGCu -3'
miRNA:   3'- -GC-GGACCAGUGCU------AGCGGCaaUGCGu -5'
12997 5' -55.6 NC_003387.1 + 48424 0.69 0.507658
Target:  5'- uGCCgGGUCGCGGUgCGCUGcu-CGCc -3'
miRNA:   3'- gCGGaCCAGUGCUA-GCGGCaauGCGu -5'
12997 5' -55.6 NC_003387.1 + 46382 0.69 0.507658
Target:  5'- gGCCUGGUCGagcuucuugcCGAUCGCCuggcCGCc -3'
miRNA:   3'- gCGGACCAGU----------GCUAGCGGcaauGCGu -5'
12997 5' -55.6 NC_003387.1 + 23082 0.69 0.5181
Target:  5'- aGCC-GGUUACucgCGCCGUcGCGCGu -3'
miRNA:   3'- gCGGaCCAGUGcuaGCGGCAaUGCGU- -5'
12997 5' -55.6 NC_003387.1 + 43952 0.69 0.539231
Target:  5'- gGUCUGGUCGuCGAUCuugaCgGUUACGCc -3'
miRNA:   3'- gCGGACCAGU-GCUAGc---GgCAAUGCGu -5'
12997 5' -55.6 NC_003387.1 + 31001 0.68 0.549907
Target:  5'- gGCCgaGGUCAgGAUCggGCCGagcgUGCGCc -3'
miRNA:   3'- gCGGa-CCAGUgCUAG--CGGCa---AUGCGu -5'
12997 5' -55.6 NC_003387.1 + 37790 0.68 0.549907
Target:  5'- gCGCCUGGgcgcagcaccCGCGGUCGCagcaGCGCGc -3'
miRNA:   3'- -GCGGACCa---------GUGCUAGCGgcaaUGCGU- -5'
12997 5' -55.6 NC_003387.1 + 45108 0.68 0.549907
Target:  5'- gCGCaucGGUCACuuGGUCGCCGU-GCGUc -3'
miRNA:   3'- -GCGga-CCAGUG--CUAGCGGCAaUGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.