miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12998 5' -48.6 NC_003387.1 + 14721 0.66 0.962178
Target:  5'- -uCUGgcGAGGUGuggauUCAggACGGCAuCGAGg -3'
miRNA:   3'- auGACaaCUCCAU-----AGU--UGUCGU-GCUC- -5'
12998 5' -48.6 NC_003387.1 + 38163 0.67 0.933086
Target:  5'- gGCUcGUcGAGGUuUCAGCAGUACa-- -3'
miRNA:   3'- aUGA-CAaCUCCAuAGUUGUCGUGcuc -5'
12998 5' -48.6 NC_003387.1 + 6330 0.67 0.927156
Target:  5'- cACUGUUGAGcUGUCAACAcgcuGCGCc-- -3'
miRNA:   3'- aUGACAACUCcAUAGUUGU----CGUGcuc -5'
12998 5' -48.6 NC_003387.1 + 15872 0.68 0.914354
Target:  5'- cUGCUGcUUGAGGgcgGUC-ACAGCGCc-- -3'
miRNA:   3'- -AUGAC-AACUCCa--UAGuUGUCGUGcuc -5'
12998 5' -48.6 NC_003387.1 + 10436 0.68 0.892819
Target:  5'- gGCUGUcgGcGGGcAUCGACAGCGCGc- -3'
miRNA:   3'- aUGACAa-C-UCCaUAGUUGUCGUGCuc -5'
12998 5' -48.6 NC_003387.1 + 23616 0.68 0.892819
Target:  5'- aGCUGUggUGGGGca-CAACGGCAucCGAGa -3'
miRNA:   3'- aUGACA--ACUCCauaGUUGUCGU--GCUC- -5'
12998 5' -48.6 NC_003387.1 + 2749 0.73 0.669435
Target:  5'- gGgUGUUGAGGUGUCAACAcaaacGCccCGAGu -3'
miRNA:   3'- aUgACAACUCCAUAGUUGU-----CGu-GCUC- -5'
12998 5' -48.6 NC_003387.1 + 2160 0.76 0.485436
Target:  5'- -cCUGUUGAGGUGUCAACacaaAGCGCc-- -3'
miRNA:   3'- auGACAACUCCAUAGUUG----UCGUGcuc -5'
12998 5' -48.6 NC_003387.1 + 29113 0.78 0.402363
Target:  5'- aGCUGUUGGGGUAUCAACAccccaGCGGa -3'
miRNA:   3'- aUGACAACUCCAUAGUUGUcg---UGCUc -5'
12998 5' -48.6 NC_003387.1 + 29913 0.86 0.137868
Target:  5'- gUACUGUUGAGGcAUCAACAGCACu-- -3'
miRNA:   3'- -AUGACAACUCCaUAGUUGUCGUGcuc -5'
12998 5' -48.6 NC_003387.1 + 50004 0.95 0.033617
Target:  5'- gUAgUGUUGAGGUAUCAACAGCACGAc -3'
miRNA:   3'- -AUgACAACUCCAUAGUUGUCGUGCUc -5'
12998 5' -48.6 NC_003387.1 + 50594 1.09 0.004025
Target:  5'- gUACUGUUGAGGUAUCAACAGCACGAGg -3'
miRNA:   3'- -AUGACAACUCCAUAGUUGUCGUGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.