miRNA display CGI


Results 41 - 60 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12999 3' -64.4 NC_003387.1 + 42023 0.69 0.186485
Target:  5'- cGCCCGGCUugauaccggcGGCCaccgccgagGCGGCCGuGGUCGc -3'
miRNA:   3'- -CGGGCCGGu---------CUGGg--------CGCCGGC-CUAGU- -5'
12999 3' -64.4 NC_003387.1 + 30202 0.69 0.18181
Target:  5'- gGCCUgGGCCAGGgUCGCGGCgGGcAUg- -3'
miRNA:   3'- -CGGG-CCGGUCUgGGCGCCGgCC-UAgu -5'
12999 3' -64.4 NC_003387.1 + 12346 0.69 0.172772
Target:  5'- cGCCgacgucgaGGCCcuuGGCCC-CGGCCGcGAUCAc -3'
miRNA:   3'- -CGGg-------CCGGu--CUGGGcGCCGGC-CUAGU- -5'
12999 3' -64.4 NC_003387.1 + 42723 0.69 0.170139
Target:  5'- cGCCCGGCCgcgGGAacgggucgggugcgcCCUGCGG-CGGAUUc -3'
miRNA:   3'- -CGGGCCGG---UCU---------------GGGCGCCgGCCUAGu -5'
12999 3' -64.4 NC_003387.1 + 21973 0.7 0.164136
Target:  5'- cGCCCGaCaCGGugcuGCCCGaCGaGCCGGGUCAc -3'
miRNA:   3'- -CGGGCcG-GUC----UGGGC-GC-CGGCCUAGU- -5'
12999 3' -64.4 NC_003387.1 + 48247 0.7 0.155891
Target:  5'- gGCUCGGCCuucgcggcGGGCUCgGCGGUCGGcUCGg -3'
miRNA:   3'- -CGGGCCGG--------UCUGGG-CGCCGGCCuAGU- -5'
12999 3' -64.4 NC_003387.1 + 37791 0.7 0.148022
Target:  5'- cGCCUgGGCgCAGcACCCGCGGUCGcagcagcgcgcGAUCGg -3'
miRNA:   3'- -CGGG-CCG-GUC-UGGGCGCCGGC-----------CUAGU- -5'
12999 3' -64.4 NC_003387.1 + 44182 0.7 0.148022
Target:  5'- uGCCCGcGCgGGcaacuaacuACCCGCGaGCCGG-UCGg -3'
miRNA:   3'- -CGGGC-CGgUC---------UGGGCGC-CGGCCuAGU- -5'
12999 3' -64.4 NC_003387.1 + 8071 0.7 0.148022
Target:  5'- gGCCCGcGCUA-ACCCGCuGCCGG-UCGg -3'
miRNA:   3'- -CGGGC-CGGUcUGGGCGcCGGCCuAGU- -5'
12999 3' -64.4 NC_003387.1 + 40435 0.7 0.144225
Target:  5'- uGCCCGGCCcgcuGAUCCgGCcGCCGG-UCGc -3'
miRNA:   3'- -CGGGCCGGu---CUGGG-CGcCGGCCuAGU- -5'
12999 3' -64.4 NC_003387.1 + 27893 0.7 0.141989
Target:  5'- aGCCCGGCCAGccGCCCGaguacgccgagcugcUGcGCCaGGUCGg -3'
miRNA:   3'- -CGGGCCGGUC--UGGGC---------------GC-CGGcCUAGU- -5'
12999 3' -64.4 NC_003387.1 + 17736 0.7 0.140516
Target:  5'- gGCCCGGCCGGGCCgccaGgGGCCa----- -3'
miRNA:   3'- -CGGGCCGGUCUGGg---CgCCGGccuagu -5'
12999 3' -64.4 NC_003387.1 + 39199 0.72 0.113866
Target:  5'- aGCUCGaCCAGGCCCccGCGGUCGGG-CAg -3'
miRNA:   3'- -CGGGCcGGUCUGGG--CGCCGGCCUaGU- -5'
12999 3' -64.4 NC_003387.1 + 45671 0.72 0.107981
Target:  5'- uGUCCGGUCAGGgCgaGCGGCCGGGc-- -3'
miRNA:   3'- -CGGGCCGGUCUgGg-CGCCGGCCUagu -5'
12999 3' -64.4 NC_003387.1 + 45036 0.72 0.102383
Target:  5'- aGCCCGGCguGaACCCGaacgGGCCGaGGUUg -3'
miRNA:   3'- -CGGGCCGguC-UGGGCg---CCGGC-CUAGu -5'
12999 3' -64.4 NC_003387.1 + 34315 0.73 0.089321
Target:  5'- aGCCCGcGCU--GCCCGCGGCCGacccgucgcagccGAUCGa -3'
miRNA:   3'- -CGGGC-CGGucUGGGCGCCGGC-------------CUAGU- -5'
12999 3' -64.4 NC_003387.1 + 52562 0.73 0.087187
Target:  5'- uGCCguCGGCCAGcagGCCCagcucgGCGGCgCGGAUCGc -3'
miRNA:   3'- -CGG--GCCGGUC---UGGG------CGCCG-GCCUAGU- -5'
12999 3' -64.4 NC_003387.1 + 17053 0.73 0.084872
Target:  5'- uGCCCGcucaGCCAccGCCCGCGGUCGaGGUCGg -3'
miRNA:   3'- -CGGGC----CGGUc-UGGGCGCCGGC-CUAGU- -5'
12999 3' -64.4 NC_003387.1 + 25477 0.74 0.082616
Target:  5'- uGCCgGGCCGccucGACCgCGCgugucagcucGGCCGGGUCGa -3'
miRNA:   3'- -CGGgCCGGU----CUGG-GCG----------CCGGCCUAGU- -5'
12999 3' -64.4 NC_003387.1 + 7383 0.74 0.070239
Target:  5'- cGCCUGaGCUgcacGGAUcggCCGCGGCCGGGUCu -3'
miRNA:   3'- -CGGGC-CGG----UCUG---GGCGCCGGCCUAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.