miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12999 3' -64.4 NC_003387.1 + 50773 1.09 0.000149
Target:  5'- uGCCCGGCCAGACCCGCGGCCGGAUCAu -3'
miRNA:   3'- -CGGGCCGGUCUGGGCGCCGGCCUAGU- -5'
12999 3' -64.4 NC_003387.1 + 45202 0.85 0.010679
Target:  5'- uGCCCGGCCcguucGACCCGCGGCC-GAUCGu -3'
miRNA:   3'- -CGGGCCGGu----CUGGGCGCCGGcCUAGU- -5'
12999 3' -64.4 NC_003387.1 + 12275 0.84 0.013359
Target:  5'- cGCCUGGC--GACCgGCGGCCGGAUCAg -3'
miRNA:   3'- -CGGGCCGguCUGGgCGCCGGCCUAGU- -5'
12999 3' -64.4 NC_003387.1 + 46304 0.79 0.032566
Target:  5'- gGCCUGGCCcgcAGuCaCCGCGGCCGGaAUCAg -3'
miRNA:   3'- -CGGGCCGG---UCuG-GGCGCCGGCC-UAGU- -5'
12999 3' -64.4 NC_003387.1 + 31246 0.76 0.052603
Target:  5'- aGCCCGGCCcGACCggCGCgggcugcgccagcggGGCCGGGUUAg -3'
miRNA:   3'- -CGGGCCGGuCUGG--GCG---------------CCGGCCUAGU- -5'
12999 3' -64.4 NC_003387.1 + 34411 0.76 0.054808
Target:  5'- cGCCguuGCCGGGCgccaccgCCGCGGCCGGGUCGg -3'
miRNA:   3'- -CGGgc-CGGUCUG-------GGCGCCGGCCUAGU- -5'
12999 3' -64.4 NC_003387.1 + 15702 0.76 0.056483
Target:  5'- uGCCCGGCCAuauccauugcGuacacgcggaACCCGC-GCCGGAUCAg -3'
miRNA:   3'- -CGGGCCGGU----------C----------UGGGCGcCGGCCUAGU- -5'
12999 3' -64.4 NC_003387.1 + 40251 0.75 0.064738
Target:  5'- uGCUCGgacGCCAGGCCCGCGGCCaGGc-- -3'
miRNA:   3'- -CGGGC---CGGUCUGGGCGCCGGcCUagu -5'
12999 3' -64.4 NC_003387.1 + 11015 0.75 0.066524
Target:  5'- cCCCGGCCGccuucgucGGCgCCGCGacGCCGGGUCGg -3'
miRNA:   3'- cGGGCCGGU--------CUG-GGCGC--CGGCCUAGU- -5'
12999 3' -64.4 NC_003387.1 + 7383 0.74 0.070239
Target:  5'- cGCCUGaGCUgcacGGAUcggCCGCGGCCGGGUCu -3'
miRNA:   3'- -CGGGC-CGG----UCUG---GGCGCCGGCCUAGu -5'
12999 3' -64.4 NC_003387.1 + 25477 0.74 0.082616
Target:  5'- uGCCgGGCCGccucGACCgCGCgugucagcucGGCCGGGUCGa -3'
miRNA:   3'- -CGGgCCGGU----CUGG-GCG----------CCGGCCUAGU- -5'
12999 3' -64.4 NC_003387.1 + 17053 0.73 0.084872
Target:  5'- uGCCCGcucaGCCAccGCCCGCGGUCGaGGUCGg -3'
miRNA:   3'- -CGGGC----CGGUc-UGGGCGCCGGC-CUAGU- -5'
12999 3' -64.4 NC_003387.1 + 52562 0.73 0.087187
Target:  5'- uGCCguCGGCCAGcagGCCCagcucgGCGGCgCGGAUCGc -3'
miRNA:   3'- -CGG--GCCGGUC---UGGG------CGCCG-GCCUAGU- -5'
12999 3' -64.4 NC_003387.1 + 34315 0.73 0.089321
Target:  5'- aGCCCGcGCU--GCCCGCGGCCGacccgucgcagccGAUCGa -3'
miRNA:   3'- -CGGGC-CGGucUGGGCGCCGGC-------------CUAGU- -5'
12999 3' -64.4 NC_003387.1 + 45036 0.72 0.102383
Target:  5'- aGCCCGGCguGaACCCGaacgGGCCGaGGUUg -3'
miRNA:   3'- -CGGGCCGguC-UGGGCg---CCGGC-CUAGu -5'
12999 3' -64.4 NC_003387.1 + 45671 0.72 0.107981
Target:  5'- uGUCCGGUCAGGgCgaGCGGCCGGGc-- -3'
miRNA:   3'- -CGGGCCGGUCUgGg-CGCCGGCCUagu -5'
12999 3' -64.4 NC_003387.1 + 39199 0.72 0.113866
Target:  5'- aGCUCGaCCAGGCCCccGCGGUCGGG-CAg -3'
miRNA:   3'- -CGGGCcGGUCUGGG--CGCCGGCCUaGU- -5'
12999 3' -64.4 NC_003387.1 + 17736 0.7 0.140516
Target:  5'- gGCCCGGCCGGGCCgccaGgGGCCa----- -3'
miRNA:   3'- -CGGGCCGGUCUGGg---CgCCGGccuagu -5'
12999 3' -64.4 NC_003387.1 + 27893 0.7 0.141989
Target:  5'- aGCCCGGCCAGccGCCCGaguacgccgagcugcUGcGCCaGGUCGg -3'
miRNA:   3'- -CGGGCCGGUC--UGGGC---------------GC-CGGcCUAGU- -5'
12999 3' -64.4 NC_003387.1 + 40435 0.7 0.144225
Target:  5'- uGCCCGGCCcgcuGAUCCgGCcGCCGG-UCGc -3'
miRNA:   3'- -CGGGCCGGu---CUGGG-CGcCGGCCuAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.