miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12999 3' -64.4 NC_003387.1 + 50773 1.09 0.000149
Target:  5'- uGCCCGGCCAGACCCGCGGCCGGAUCAu -3'
miRNA:   3'- -CGGGCCGGUCUGGGCGCCGGCCUAGU- -5'
12999 3' -64.4 NC_003387.1 + 30245 0.67 0.239288
Target:  5'- cGCCCGGUacGACgCCGCGGUCG--UCGa -3'
miRNA:   3'- -CGGGCCGguCUG-GGCGCCGGCcuAGU- -5'
12999 3' -64.4 NC_003387.1 + 10517 0.67 0.251245
Target:  5'- cGCUCGGCUcGGCgaUGCgGGCCGGGUUc -3'
miRNA:   3'- -CGGGCCGGuCUGg-GCG-CCGGCCUAGu -5'
12999 3' -64.4 NC_003387.1 + 22302 0.66 0.304019
Target:  5'- aCCCGGCaAGccGCCUgGUGGCgcCGGAUCAg -3'
miRNA:   3'- cGGGCCGgUC--UGGG-CGCCG--GCCUAGU- -5'
12999 3' -64.4 NC_003387.1 + 45671 0.72 0.107981
Target:  5'- uGUCCGGUCAGGgCgaGCGGCCGGGc-- -3'
miRNA:   3'- -CGGGCCGGUCUgGg-CGCCGGCCUagu -5'
12999 3' -64.4 NC_003387.1 + 39199 0.72 0.113866
Target:  5'- aGCUCGaCCAGGCCCccGCGGUCGGG-CAg -3'
miRNA:   3'- -CGGGCcGGUCUGGG--CGCCGGCCUaGU- -5'
12999 3' -64.4 NC_003387.1 + 27893 0.7 0.141989
Target:  5'- aGCCCGGCCAGccGCCCGaguacgccgagcugcUGcGCCaGGUCGg -3'
miRNA:   3'- -CGGGCCGGUC--UGGGC---------------GC-CGGcCUAGU- -5'
12999 3' -64.4 NC_003387.1 + 8071 0.7 0.148022
Target:  5'- gGCCCGcGCUA-ACCCGCuGCCGG-UCGg -3'
miRNA:   3'- -CGGGC-CGGUcUGGGCGcCGGCCuAGU- -5'
12999 3' -64.4 NC_003387.1 + 14168 0.68 0.196152
Target:  5'- cGCCgGGCCGGG-CCGCGGgCGuGAgggCGu -3'
miRNA:   3'- -CGGgCCGGUCUgGGCGCCgGC-CUa--GU- -5'
12999 3' -64.4 NC_003387.1 + 24822 0.68 0.226131
Target:  5'- -gCCGGUCAaGGCCgcgugugcgcugucUGCGGCCGGGUg- -3'
miRNA:   3'- cgGGCCGGU-CUGG--------------GCGCCGGCCUAgu -5'
12999 3' -64.4 NC_003387.1 + 48245 0.68 0.206254
Target:  5'- cGCCCGGUCGG--CCGCGGCCa----- -3'
miRNA:   3'- -CGGGCCGGUCugGGCGCCGGccuagu -5'
12999 3' -64.4 NC_003387.1 + 324 0.69 0.18934
Target:  5'- aGCCCGGCgacacgcacgccaAGAUCCGCGuGCgCGcGGUCGa -3'
miRNA:   3'- -CGGGCCGg------------UCUGGGCGC-CG-GC-CUAGU- -5'
12999 3' -64.4 NC_003387.1 + 45202 0.85 0.010679
Target:  5'- uGCCCGGCCcguucGACCCGCGGCC-GAUCGu -3'
miRNA:   3'- -CGGGCCGGu----CUGGGCGCCGGcCUAGU- -5'
12999 3' -64.4 NC_003387.1 + 40121 0.68 0.21042
Target:  5'- gGCCCGGCgucgggcaaguucaAGGCCCacggcgacaccgucgGCGGCCcGAUCGu -3'
miRNA:   3'- -CGGGCCGg-------------UCUGGG---------------CGCCGGcCUAGU- -5'
12999 3' -64.4 NC_003387.1 + 12275 0.84 0.013359
Target:  5'- cGCCUGGC--GACCgGCGGCCGGAUCAg -3'
miRNA:   3'- -CGGGCCGguCUGGgCGCCGGCCUAGU- -5'
12999 3' -64.4 NC_003387.1 + 37791 0.7 0.148022
Target:  5'- cGCCUgGGCgCAGcACCCGCGGUCGcagcagcgcgcGAUCGg -3'
miRNA:   3'- -CGGG-CCG-GUC-UGGGCGCCGGC-----------CUAGU- -5'
12999 3' -64.4 NC_003387.1 + 45395 0.68 0.216804
Target:  5'- cGCCCGGCC--GCCCGa-GCC-GAUCGu -3'
miRNA:   3'- -CGGGCCGGucUGGGCgcCGGcCUAGU- -5'
12999 3' -64.4 NC_003387.1 + 45082 0.67 0.251245
Target:  5'- cGUCCugGGCCGGuguUCgGCGGCCaGGUCGu -3'
miRNA:   3'- -CGGG--CCGGUCu--GGgCGCCGGcCUAGU- -5'
12999 3' -64.4 NC_003387.1 + 34315 0.73 0.089321
Target:  5'- aGCCCGcGCU--GCCCGCGGCCGacccgucgcagccGAUCGa -3'
miRNA:   3'- -CGGGC-CGGucUGGGCGCCGGC-------------CUAGU- -5'
12999 3' -64.4 NC_003387.1 + 17736 0.7 0.140516
Target:  5'- gGCCCGGCCGGGCCgccaGgGGCCa----- -3'
miRNA:   3'- -CGGGCCGGUCUGGg---CgCCGGccuagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.