miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12999 5' -60.2 NC_003387.1 + 50810 1.04 0.000637
Target:  5'- gAUCGACCUCACCGCGGCCGACCUGUAc -3'
miRNA:   3'- -UAGCUGGAGUGGCGCCGGCUGGACAU- -5'
12999 5' -60.2 NC_003387.1 + 44390 0.8 0.043941
Target:  5'- gGUCGACgaggcgaagCUCGCCGCGGCUGACgCUGUGc -3'
miRNA:   3'- -UAGCUG---------GAGUGGCGCCGGCUG-GACAU- -5'
12999 5' -60.2 NC_003387.1 + 31138 0.74 0.117959
Target:  5'- cGUCGGCCUCGCUGauGCCGcgcGCCUGg- -3'
miRNA:   3'- -UAGCUGGAGUGGCgcCGGC---UGGACau -5'
12999 5' -60.2 NC_003387.1 + 1490 0.74 0.12809
Target:  5'- cGUCGACgUCgagcaccagGCCGCGGCCGACgUGc- -3'
miRNA:   3'- -UAGCUGgAG---------UGGCGCCGGCUGgACau -5'
12999 5' -60.2 NC_003387.1 + 31070 0.72 0.177112
Target:  5'- cUCGGCCgcCGCCGCGGUCGACgagCUGa- -3'
miRNA:   3'- uAGCUGGa-GUGGCGCCGGCUG---GACau -5'
12999 5' -60.2 NC_003387.1 + 5190 0.72 0.181876
Target:  5'- -aCGACCUCGCCGUaacGGUCGcCCUGc- -3'
miRNA:   3'- uaGCUGGAGUGGCG---CCGGCuGGACau -5'
12999 5' -60.2 NC_003387.1 + 45507 0.72 0.181876
Target:  5'- cGUCGGCCgggucagCACCGCGGCC-ACCa--- -3'
miRNA:   3'- -UAGCUGGa------GUGGCGCCGGcUGGacau -5'
12999 5' -60.2 NC_003387.1 + 32783 0.72 0.181876
Target:  5'- -cCGGCCgcgUACCGCcgGGUCGACCUGg- -3'
miRNA:   3'- uaGCUGGa--GUGGCG--CCGGCUGGACau -5'
12999 5' -60.2 NC_003387.1 + 7298 0.71 0.191745
Target:  5'- -cCGGCgguaaCUCGCCGgGGCCGuACCUGUc -3'
miRNA:   3'- uaGCUG-----GAGUGGCgCCGGC-UGGACAu -5'
12999 5' -60.2 NC_003387.1 + 45329 0.71 0.207427
Target:  5'- --aGACCcgGCCGCGGCCGAUCcGUGc -3'
miRNA:   3'- uagCUGGagUGGCGCCGGCUGGaCAU- -5'
12999 5' -60.2 NC_003387.1 + 42386 0.71 0.209599
Target:  5'- gGUCGGCCguaucgaCGCCGCGGCUGAuucccuugcccgcguCCUGg- -3'
miRNA:   3'- -UAGCUGGa------GUGGCGCCGGCU---------------GGACau -5'
12999 5' -60.2 NC_003387.1 + 47749 0.7 0.218487
Target:  5'- -cCGACCUgCugCGCGaGCaCGGCCUGa- -3'
miRNA:   3'- uaGCUGGA-GugGCGC-CG-GCUGGACau -5'
12999 5' -60.2 NC_003387.1 + 6283 0.7 0.218487
Target:  5'- cAUCGACgaCgcgACCGUGGCCGugCUGa- -3'
miRNA:   3'- -UAGCUGgaG---UGGCGCCGGCugGACau -5'
12999 5' -60.2 NC_003387.1 + 37090 0.7 0.23602
Target:  5'- gGUCGACCUCGCCGUGcGCgcccuCGACgUGc- -3'
miRNA:   3'- -UAGCUGGAGUGGCGC-CG-----GCUGgACau -5'
12999 5' -60.2 NC_003387.1 + 45873 0.69 0.254717
Target:  5'- -gCGGCUgcgCGCCGCGGCCGAgCgGg- -3'
miRNA:   3'- uaGCUGGa--GUGGCGCCGGCUgGaCau -5'
12999 5' -60.2 NC_003387.1 + 10660 0.69 0.261215
Target:  5'- uUCGGCCUCGaCGCGGCugCGACCa--- -3'
miRNA:   3'- uAGCUGGAGUgGCGCCG--GCUGGacau -5'
12999 5' -60.2 NC_003387.1 + 7608 0.68 0.295734
Target:  5'- cGUC-ACCUCguacACCGCGGCgucgaCGACCUGg- -3'
miRNA:   3'- -UAGcUGGAG----UGGCGCCG-----GCUGGACau -5'
12999 5' -60.2 NC_003387.1 + 4473 0.68 0.295734
Target:  5'- -cCGAgcugCUgGCCGCGGCCGACCgGg- -3'
miRNA:   3'- uaGCUg---GAgUGGCGCCGGCUGGaCau -5'
12999 5' -60.2 NC_003387.1 + 20466 0.68 0.309752
Target:  5'- uGUCGGCCUCggcgacgGCCagGCGGUCGGCCa--- -3'
miRNA:   3'- -UAGCUGGAG-------UGG--CGCCGGCUGGacau -5'
12999 5' -60.2 NC_003387.1 + 24787 0.68 0.318097
Target:  5'- -cCGGaaccgCUCGgggUCGCGGCCGACCUGg- -3'
miRNA:   3'- uaGCUg----GAGU---GGCGCCGGCUGGACau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.