miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12999 5' -60.2 NC_003387.1 + 50810 1.04 0.000637
Target:  5'- gAUCGACCUCACCGCGGCCGACCUGUAc -3'
miRNA:   3'- -UAGCUGGAGUGGCGCCGGCUGGACAU- -5'
12999 5' -60.2 NC_003387.1 + 8687 0.67 0.375115
Target:  5'- uUCGGCa-CGCCGCuGCCGACCg--- -3'
miRNA:   3'- uAGCUGgaGUGGCGcCGGCUGGacau -5'
12999 5' -60.2 NC_003387.1 + 34700 0.67 0.375115
Target:  5'- cGUgGGCCUggUACaUGCGGCgCGACCUGg- -3'
miRNA:   3'- -UAgCUGGA--GUG-GCGCCG-GCUGGACau -5'
12999 5' -60.2 NC_003387.1 + 35660 0.66 0.429202
Target:  5'- -cCGACCUCgACCGCGGgCGGuggCUGa- -3'
miRNA:   3'- uaGCUGGAG-UGGCGCCgGCUg--GACau -5'
12999 5' -60.2 NC_003387.1 + 45329 0.71 0.207427
Target:  5'- --aGACCcgGCCGCGGCCGAUCcGUGc -3'
miRNA:   3'- uagCUGGagUGGCGCCGGCUGGaCAU- -5'
12999 5' -60.2 NC_003387.1 + 6283 0.7 0.218487
Target:  5'- cAUCGACgaCgcgACCGUGGCCGugCUGa- -3'
miRNA:   3'- -UAGCUGgaG---UGGCGCCGGCugGACau -5'
12999 5' -60.2 NC_003387.1 + 37090 0.7 0.23602
Target:  5'- gGUCGACCUCGCCGUGcGCgcccuCGACgUGc- -3'
miRNA:   3'- -UAGCUGGAGUGGCGC-CG-----GCUGgACau -5'
12999 5' -60.2 NC_003387.1 + 45873 0.69 0.254717
Target:  5'- -gCGGCUgcgCGCCGCGGCCGAgCgGg- -3'
miRNA:   3'- uaGCUGGa--GUGGCGCCGGCUgGaCau -5'
12999 5' -60.2 NC_003387.1 + 30280 0.68 0.333699
Target:  5'- --aGGCCaaCGCCGCGGCCcgcGCCUGg- -3'
miRNA:   3'- uagCUGGa-GUGGCGCCGGc--UGGACau -5'
12999 5' -60.2 NC_003387.1 + 833 0.67 0.375115
Target:  5'- -aCGGCCUguaCGCGGCCGACaUGUu -3'
miRNA:   3'- uaGCUGGAgugGCGCCGGCUGgACAu -5'
12999 5' -60.2 NC_003387.1 + 38403 0.67 0.357304
Target:  5'- cUCGACCUCgacaACCaccccgaGCGGCUGGCgCUGg- -3'
miRNA:   3'- uAGCUGGAG----UGG-------CGCCGGCUG-GACau -5'
12999 5' -60.2 NC_003387.1 + 24873 0.68 0.325829
Target:  5'- cUCGACCUCggGCgGUGGCUGcgcCCUGUc -3'
miRNA:   3'- uAGCUGGAG--UGgCGCCGGCu--GGACAu -5'
12999 5' -60.2 NC_003387.1 + 44390 0.8 0.043941
Target:  5'- gGUCGACgaggcgaagCUCGCCGCGGCUGACgCUGUGc -3'
miRNA:   3'- -UAGCUG---------GAGUGGCGCCGGCUG-GACAU- -5'
12999 5' -60.2 NC_003387.1 + 42055 0.67 0.358138
Target:  5'- gAUCGACCgCGgCGUGuaCGACCUGg- -3'
miRNA:   3'- -UAGCUGGaGUgGCGCcgGCUGGACau -5'
12999 5' -60.2 NC_003387.1 + 32783 0.72 0.181876
Target:  5'- -cCGGCCgcgUACCGCcgGGUCGACCUGg- -3'
miRNA:   3'- uaGCUGGa--GUGGCG--CCGGCUGGACau -5'
12999 5' -60.2 NC_003387.1 + 10660 0.69 0.261215
Target:  5'- uUCGGCCUCGaCGCGGCugCGACCa--- -3'
miRNA:   3'- uAGCUGGAGUgGCGCCG--GCUGGacau -5'
12999 5' -60.2 NC_003387.1 + 45205 0.67 0.358138
Target:  5'- -cCGGCCcguUCGacCCGCGGCCGAUC-GUGg -3'
miRNA:   3'- uaGCUGG---AGU--GGCGCCGGCUGGaCAU- -5'
12999 5' -60.2 NC_003387.1 + 17140 0.67 0.375115
Target:  5'- cUCGACCggcugUCACCgGCGGCCcGCgCUGa- -3'
miRNA:   3'- uAGCUGG-----AGUGG-CGCCGGcUG-GACau -5'
12999 5' -60.2 NC_003387.1 + 7298 0.71 0.191745
Target:  5'- -cCGGCgguaaCUCGCCGgGGCCGuACCUGUc -3'
miRNA:   3'- uaGCUG-----GAGUGGCgCCGGC-UGGACAu -5'
12999 5' -60.2 NC_003387.1 + 47749 0.7 0.218487
Target:  5'- -cCGACCUgCugCGCGaGCaCGGCCUGa- -3'
miRNA:   3'- uaGCUGGA-GugGCGC-CG-GCUGGACau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.