miRNA display CGI


Results 21 - 40 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13001 5' -56.7 NC_003387.1 + 3317 0.66 0.598972
Target:  5'- cGCCCAccuccGCAuccGCcuGCGCAGCgUGCGCa -3'
miRNA:   3'- -CGGGUuu---UGU---CG--CGCGUUGgGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 3425 0.67 0.545003
Target:  5'- uGCCCu---CGGCGUGCucggcgagcACCUGgGCGa -3'
miRNA:   3'- -CGGGuuuuGUCGCGCGu--------UGGGCgCGC- -5'
13001 5' -56.7 NC_003387.1 + 3532 0.73 0.254895
Target:  5'- gGCUCAGcaacgucGACGGC-CGCcGCCUGCGCGa -3'
miRNA:   3'- -CGGGUU-------UUGUCGcGCGuUGGGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 3727 0.7 0.369366
Target:  5'- gGCCaCAGccacgcgaucGACGGC-CGCAuGCCCGCGUGc -3'
miRNA:   3'- -CGG-GUU----------UUGUCGcGCGU-UGGGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 3805 0.68 0.502988
Target:  5'- cGCCggCAAAAguGCcaacGCGCAGCUCGCagGCGa -3'
miRNA:   3'- -CGG--GUUUUguCG----CGCGUUGGGCG--CGC- -5'
13001 5' -56.7 NC_003387.1 + 4199 0.68 0.481497
Target:  5'- cGCCCGAcuacgugcAGCAGUGggaGCAggauuaccugcagGCCCGcCGCGa -3'
miRNA:   3'- -CGGGUU--------UUGUCGCg--CGU-------------UGGGC-GCGC- -5'
13001 5' -56.7 NC_003387.1 + 4290 0.72 0.289952
Target:  5'- gGCCgCGggcGAGCAGCGCaccGCGACCCG-GCa -3'
miRNA:   3'- -CGG-GU---UUUGUCGCG---CGUUGGGCgCGc -5'
13001 5' -56.7 NC_003387.1 + 4328 0.73 0.242752
Target:  5'- uGCCC-AGGCuGCGCcCGGCCCGCuuGCGa -3'
miRNA:   3'- -CGGGuUUUGuCGCGcGUUGGGCG--CGC- -5'
13001 5' -56.7 NC_003387.1 + 4470 0.68 0.491677
Target:  5'- aGCCCGAGcugcuggccGCGGCcgaccggGCGCGACacgauCGUGCGg -3'
miRNA:   3'- -CGGGUUU---------UGUCG-------CGCGUUGg----GCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 4762 0.67 0.534382
Target:  5'- cGCCCAGcucGCGGUGCuucGCGGCCCacacgGCGUc -3'
miRNA:   3'- -CGGGUUu--UGUCGCG---CGUUGGG-----CGCGc -5'
13001 5' -56.7 NC_003387.1 + 4800 0.72 0.304698
Target:  5'- uGCCCAugccugccgccGAcCAGCGCGUgcgcaAGCUCGUGCGu -3'
miRNA:   3'- -CGGGU-----------UUuGUCGCGCG-----UUGGGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 4905 0.66 0.598972
Target:  5'- uGCCgGGuGCGGUaGCuGCAcuGCCCGgCGCGg -3'
miRNA:   3'- -CGGgUUuUGUCG-CG-CGU--UGGGC-GCGC- -5'
13001 5' -56.7 NC_003387.1 + 5124 0.7 0.405048
Target:  5'- gGCgaGAAccGCAGCGUGCGACCCGauCGg -3'
miRNA:   3'- -CGggUUU--UGUCGCGCGUUGGGCgcGC- -5'
13001 5' -56.7 NC_003387.1 + 5319 0.68 0.4927
Target:  5'- gGCUCGGGGCGGgGC-CGGuugcCCCGCGCu -3'
miRNA:   3'- -CGGGUUUUGUCgCGcGUU----GGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 5791 0.7 0.41337
Target:  5'- -aCCAGAACAagccGCccgcaccaccgaaGCGCAAcCCCGCGCa -3'
miRNA:   3'- cgGGUUUUGU----CG-------------CGCGUU-GGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 5805 0.7 0.378083
Target:  5'- uGCCCGGcuCaAGCGUGCGGCC-GUGCa -3'
miRNA:   3'- -CGGGUUuuG-UCGCGCGUUGGgCGCGc -5'
13001 5' -56.7 NC_003387.1 + 6289 0.67 0.592438
Target:  5'- uCCCGAGuguugauuggucaacAcCGGCGaCGUuACCCGCGCa -3'
miRNA:   3'- cGGGUUU---------------U-GUCGC-GCGuUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 6756 0.69 0.462444
Target:  5'- gGCCC---ACAGCGCacGCcucGCCCuuGCGCGg -3'
miRNA:   3'- -CGGGuuuUGUCGCG--CGu--UGGG--CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 6847 0.78 0.113889
Target:  5'- cGCCCGcucggccGCGGCGCGCAGCCgcagcagcuCGCGCa -3'
miRNA:   3'- -CGGGUuu-----UGUCGCGCGUUGG---------GCGCGc -5'
13001 5' -56.7 NC_003387.1 + 6946 0.69 0.452576
Target:  5'- gGCCUgcgcAGCGGCGgGCAggcGCCacaGCGCGc -3'
miRNA:   3'- -CGGGuu--UUGUCGCgCGU---UGGg--CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.