miRNA display CGI


Results 1 - 20 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13001 5' -56.7 NC_003387.1 + 124 0.71 0.360789
Target:  5'- cGCCuCGAuGCGGuCGCccucGCGAUCCGCGCc -3'
miRNA:   3'- -CGG-GUUuUGUC-GCG----CGUUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 174 0.66 0.620813
Target:  5'- gGCCgacggCAAGACGGUGCucgacuCGGCCCGCGaCa -3'
miRNA:   3'- -CGG-----GUUUUGUCGCGc-----GUUGGGCGC-Gc -5'
13001 5' -56.7 NC_003387.1 + 244 0.68 0.4927
Target:  5'- cCCCGAcaugcuCAGCGUGCAgugcccuggcuGCgCCGCGCc -3'
miRNA:   3'- cGGGUUuu----GUCGCGCGU-----------UG-GGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 318 0.7 0.418039
Target:  5'- aGCCCGAGcccggcgacacGCAcgccaagauccgcguGCGCGCGgucgAUCUGCGCGa -3'
miRNA:   3'- -CGGGUUU-----------UGU---------------CGCGCGU----UGGGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 459 0.67 0.588089
Target:  5'- -gCCGcgGCGGcCGacgGCGACCgGCGCGa -3'
miRNA:   3'- cgGGUuuUGUC-GCg--CGUUGGgCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 490 0.7 0.395925
Target:  5'- uGCUCGucGCGaUGCGC-GCCCGCGUGg -3'
miRNA:   3'- -CGGGUuuUGUcGCGCGuUGGGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 658 0.68 0.4927
Target:  5'- cGCCCGAugaaccauucGACGGCGaCGCuuAGCgaggUCGCGCGc -3'
miRNA:   3'- -CGGGUU----------UUGUCGC-GCG--UUG----GGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 739 0.66 0.642692
Target:  5'- uGgCCGucGguGCGCGCGACgUgugGCGCGa -3'
miRNA:   3'- -CgGGUuuUguCGCGCGUUGgG---CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 932 0.67 0.588089
Target:  5'- cGCCUAAcacGACGGUgaucuggacgGCGCAccggACCCGCaCGg -3'
miRNA:   3'- -CGGGUU---UUGUCG----------CGCGU----UGGGCGcGC- -5'
13001 5' -56.7 NC_003387.1 + 1204 0.67 0.545003
Target:  5'- uGCCCGcgacGAacGCGGCGCcUAACCCGCu-- -3'
miRNA:   3'- -CGGGU----UU--UGUCGCGcGUUGGGCGcgc -5'
13001 5' -56.7 NC_003387.1 + 1304 0.7 0.414301
Target:  5'- aGUUCGAGGCGGCGcCGCAggcGCUCGC-CGg -3'
miRNA:   3'- -CGGGUUUUGUCGC-GCGU---UGGGCGcGC- -5'
13001 5' -56.7 NC_003387.1 + 1495 0.76 0.158672
Target:  5'- gGCCCAAGGuCAGCGUGCAccaGCCgGuCGUGa -3'
miRNA:   3'- -CGGGUUUU-GUCGCGCGU---UGGgC-GCGC- -5'
13001 5' -56.7 NC_003387.1 + 1614 0.73 0.275771
Target:  5'- gGCCgGGcGCGuGUGgGCAGCCuCGCGCGg -3'
miRNA:   3'- -CGGgUUuUGU-CGCgCGUUGG-GCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 1704 0.71 0.327884
Target:  5'- cGCUCugcGCuuGCGUGCAugCCGCGUGc -3'
miRNA:   3'- -CGGGuuuUGu-CGCGCGUugGGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 1761 0.69 0.452576
Target:  5'- aGCCCG--GCGGCgGCGCuggcGCCCGaGCu -3'
miRNA:   3'- -CGGGUuuUGUCG-CGCGu---UGGGCgCGc -5'
13001 5' -56.7 NC_003387.1 + 2422 0.7 0.41337
Target:  5'- cGCCUggGAGAUguGGCaGCGCAACCgcauggaCGCGCGc -3'
miRNA:   3'- -CGGG--UUUUG--UCG-CGCGUUGG-------GCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 2934 0.7 0.395925
Target:  5'- uGUCgCGGuuCGGCGC-CAACCCGCaGCGc -3'
miRNA:   3'- -CGG-GUUuuGUCGCGcGUUGGGCG-CGC- -5'
13001 5' -56.7 NC_003387.1 + 3150 0.69 0.423684
Target:  5'- cGCCCG--GCAGCGgGCGcACCuCG-GCGa -3'
miRNA:   3'- -CGGGUuuUGUCGCgCGU-UGG-GCgCGC- -5'
13001 5' -56.7 NC_003387.1 + 3180 0.66 0.631752
Target:  5'- gGCCCuc-GCAGcCGCGgaggcCAACCagcaGCGCa -3'
miRNA:   3'- -CGGGuuuUGUC-GCGC-----GUUGGg---CGCGc -5'
13001 5' -56.7 NC_003387.1 + 3291 0.67 0.577243
Target:  5'- cCCCGAcACGGcCGC-CGACUCGgGCGc -3'
miRNA:   3'- cGGGUUuUGUC-GCGcGUUGGGCgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.