miRNA display CGI


Results 1 - 20 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13001 5' -56.7 NC_003387.1 + 51083 1.11 0.000508
Target:  5'- uGCCCAAAACAGCGCGCAACCCGCGCGa -3'
miRNA:   3'- -CGGGUUUUGUCGCGCGUUGGGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 22938 0.72 0.297254
Target:  5'- cGCCgGAuACA-CGCGCAGCugaCCGCGUGg -3'
miRNA:   3'- -CGGgUUuUGUcGCGCGUUG---GGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 25473 0.72 0.312284
Target:  5'- gGCUCAu-GCGGCGCauccugucggGCGACCUGCaGCGg -3'
miRNA:   3'- -CGGGUuuUGUCGCG----------CGUUGGGCG-CGC- -5'
13001 5' -56.7 NC_003387.1 + 38627 0.66 0.642692
Target:  5'- gGCCCGcAGGCcgcgcuGGCGCuGCAGuuCCgGCGCa -3'
miRNA:   3'- -CGGGU-UUUG------UCGCG-CGUU--GGgCGCGc -5'
13001 5' -56.7 NC_003387.1 + 21691 0.78 0.123145
Target:  5'- cGCCCuggccgccuCGGCgaGCGCGGCCCGCGCc -3'
miRNA:   3'- -CGGGuuuu-----GUCG--CGCGUUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 34306 0.77 0.150235
Target:  5'- uGCCC-GAGCAGCccGCGCuGCCCGCGg- -3'
miRNA:   3'- -CGGGuUUUGUCG--CGCGuUGGGCGCgc -5'
13001 5' -56.7 NC_003387.1 + 1495 0.76 0.158672
Target:  5'- gGCCCAAGGuCAGCGUGCAccaGCCgGuCGUGa -3'
miRNA:   3'- -CGGGUUUU-GUCGCGCGU---UGGgC-GCGC- -5'
13001 5' -56.7 NC_003387.1 + 29405 0.76 0.170738
Target:  5'- cGCCCGccgggcgcaggaggAGGCcGcCGCaGCGGCCCGCGCGg -3'
miRNA:   3'- -CGGGU--------------UUUGuC-GCG-CGUUGGGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 17160 0.74 0.21309
Target:  5'- gGCCCGcgcuGAGCuGGUGCGCcGCCUGgGCGg -3'
miRNA:   3'- -CGGGU----UUUG-UCGCGCGuUGGGCgCGC- -5'
13001 5' -56.7 NC_003387.1 + 21370 0.72 0.297254
Target:  5'- uGCCCuggcCGGUGCuguuCGACCCGCGCu -3'
miRNA:   3'- -CGGGuuuuGUCGCGc---GUUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 26120 0.73 0.275771
Target:  5'- uGCgCCAGGuCGGCGCGUccgucgccGCUCGCGCGg -3'
miRNA:   3'- -CG-GGUUUuGUCGCGCGu-------UGGGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 24186 0.75 0.202124
Target:  5'- gGCCCAAAACAGCG-GC-ACCUaugacgGCGCa -3'
miRNA:   3'- -CGGGUUUUGUCGCgCGuUGGG------CGCGc -5'
13001 5' -56.7 NC_003387.1 + 48140 0.83 0.049757
Target:  5'- aCCCGcgcGCAGCGCGCcaccgaGGCCCGCGCGg -3'
miRNA:   3'- cGGGUuu-UGUCGCGCG------UUGGGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 43668 0.72 0.289952
Target:  5'- cGCCgAGGAgGGCGaCGCGAUCCugGCGUGg -3'
miRNA:   3'- -CGGgUUUUgUCGC-GCGUUGGG--CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 25903 0.83 0.05122
Target:  5'- cGUCCAGGGCGGCGCGCucaccGACCaccaGCGCGg -3'
miRNA:   3'- -CGGGUUUUGUCGCGCG-----UUGGg---CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 21463 0.75 0.181658
Target:  5'- gGCCCc--GCuG-GCGCAGCCCGCGCc -3'
miRNA:   3'- -CGGGuuuUGuCgCGCGUUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 4290 0.72 0.289952
Target:  5'- gGCCgCGggcGAGCAGCGCaccGCGACCCG-GCa -3'
miRNA:   3'- -CGG-GU---UUUGUCGCG---CGUUGGGCgCGc -5'
13001 5' -56.7 NC_003387.1 + 27926 0.72 0.297254
Target:  5'- uGCgCCAGGuCGGC-CGCGACCCGaGCGg -3'
miRNA:   3'- -CG-GGUUUuGUCGcGCGUUGGGCgCGC- -5'
13001 5' -56.7 NC_003387.1 + 13713 0.78 0.117118
Target:  5'- gGCCCAGGcggcGCAGgGCGauCAGCCUGCGCa -3'
miRNA:   3'- -CGGGUUU----UGUCgCGC--GUUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 50198 0.77 0.150235
Target:  5'- -aCCGGGACGGCaaCGaCGACCCGCGCGu -3'
miRNA:   3'- cgGGUUUUGUCGc-GC-GUUGGGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.