Results 1 - 20 of 251 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13001 | 5' | -56.7 | NC_003387.1 | + | 51083 | 1.11 | 0.000508 |
Target: 5'- uGCCCAAAACAGCGCGCAACCCGCGCGa -3' miRNA: 3'- -CGGGUUUUGUCGCGCGUUGGGCGCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 48140 | 0.83 | 0.049757 |
Target: 5'- aCCCGcgcGCAGCGCGCcaccgaGGCCCGCGCGg -3' miRNA: 3'- cGGGUuu-UGUCGCGCG------UUGGGCGCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 25903 | 0.83 | 0.05122 |
Target: 5'- cGUCCAGGGCGGCGCGCucaccGACCaccaGCGCGg -3' miRNA: 3'- -CGGGUUUUGUCGCGCG-----UUGGg---CGCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 15364 | 0.81 | 0.074478 |
Target: 5'- cGCCCGAcaggugccGCAGauaGCGCAGCCCGCgGCGg -3' miRNA: 3'- -CGGGUUu-------UGUCg--CGCGUUGGGCG-CGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 6847 | 0.78 | 0.113889 |
Target: 5'- cGCCCGcucggccGCGGCGCGCAGCCgcagcagcuCGCGCa -3' miRNA: 3'- -CGGGUuu-----UGUCGCGCGUUGG---------GCGCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 13713 | 0.78 | 0.117118 |
Target: 5'- gGCCCAGGcggcGCAGgGCGauCAGCCUGCGCa -3' miRNA: 3'- -CGGGUUU----UGUCgCGC--GUUGGGCGCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 21691 | 0.78 | 0.123145 |
Target: 5'- cGCCCuggccgccuCGGCgaGCGCGGCCCGCGCc -3' miRNA: 3'- -CGGGuuuu-----GUCG--CGCGUUGGGCGCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 10501 | 0.77 | 0.140651 |
Target: 5'- cGCCCAucGCGGUGCGCcggucgccguccuGCUCGCGCa -3' miRNA: 3'- -CGGGUuuUGUCGCGCGu------------UGGGCGCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 13578 | 0.77 | 0.146172 |
Target: 5'- cGCCCu---CGGCGCGgAACCUGUGCu -3' miRNA: 3'- -CGGGuuuuGUCGCGCgUUGGGCGCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 50198 | 0.77 | 0.150235 |
Target: 5'- -aCCGGGACGGCaaCGaCGACCCGCGCGu -3' miRNA: 3'- cgGGUUUUGUCGc-GC-GUUGGGCGCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 34306 | 0.77 | 0.150235 |
Target: 5'- uGCCC-GAGCAGCccGCGCuGCCCGCGg- -3' miRNA: 3'- -CGGGuUUUGUCG--CGCGuUGGGCGCgc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 1495 | 0.76 | 0.158672 |
Target: 5'- gGCCCAAGGuCAGCGUGCAccaGCCgGuCGUGa -3' miRNA: 3'- -CGGGUUUU-GUCGCGCGU---UGGgC-GCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 29405 | 0.76 | 0.170738 |
Target: 5'- cGCCCGccgggcgcaggaggAGGCcGcCGCaGCGGCCCGCGCGg -3' miRNA: 3'- -CGGGU--------------UUUGuC-GCG-CGUUGGGCGCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 36904 | 0.76 | 0.172129 |
Target: 5'- cGCCUcgguGACGcuguGCGCGUAGCCCaGCGCGa -3' miRNA: 3'- -CGGGuu--UUGU----CGCGCGUUGGG-CGCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 21463 | 0.75 | 0.181658 |
Target: 5'- gGCCCc--GCuG-GCGCAGCCCGCGCc -3' miRNA: 3'- -CGGGuuuUGuCgCGCGUUGGGCGCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 35555 | 0.75 | 0.181658 |
Target: 5'- cGCCC-AGGCGGCGCacCAGCUCaGCGCGg -3' miRNA: 3'- -CGGGuUUUGUCGCGc-GUUGGG-CGCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 24186 | 0.75 | 0.202124 |
Target: 5'- gGCCCAAAACAGCG-GC-ACCUaugacgGCGCa -3' miRNA: 3'- -CGGGUUUUGUCGCgCGuUGGG------CGCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 14085 | 0.75 | 0.202124 |
Target: 5'- cGCCgGAAcuGCAGCgccaGCGCGGCCUGCGgGc -3' miRNA: 3'- -CGGgUUU--UGUCG----CGCGUUGGGCGCgC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 17160 | 0.74 | 0.21309 |
Target: 5'- gGCCCGcgcuGAGCuGGUGCGCcGCCUGgGCGg -3' miRNA: 3'- -CGGGU----UUUG-UCGCGCGuUGGGCgCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 8193 | 0.74 | 0.218762 |
Target: 5'- aGCCCu--GCGGCGCcggGCGGCCCG-GCa -3' miRNA: 3'- -CGGGuuuUGUCGCG---CGUUGGGCgCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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