miRNA display CGI


Results 1 - 20 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13001 5' -56.7 NC_003387.1 + 51083 1.11 0.000508
Target:  5'- uGCCCAAAACAGCGCGCAACCCGCGCGa -3'
miRNA:   3'- -CGGGUUUUGUCGCGCGUUGGGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 48140 0.83 0.049757
Target:  5'- aCCCGcgcGCAGCGCGCcaccgaGGCCCGCGCGg -3'
miRNA:   3'- cGGGUuu-UGUCGCGCG------UUGGGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 25903 0.83 0.05122
Target:  5'- cGUCCAGGGCGGCGCGCucaccGACCaccaGCGCGg -3'
miRNA:   3'- -CGGGUUUUGUCGCGCG-----UUGGg---CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 15364 0.81 0.074478
Target:  5'- cGCCCGAcaggugccGCAGauaGCGCAGCCCGCgGCGg -3'
miRNA:   3'- -CGGGUUu-------UGUCg--CGCGUUGGGCG-CGC- -5'
13001 5' -56.7 NC_003387.1 + 6847 0.78 0.113889
Target:  5'- cGCCCGcucggccGCGGCGCGCAGCCgcagcagcuCGCGCa -3'
miRNA:   3'- -CGGGUuu-----UGUCGCGCGUUGG---------GCGCGc -5'
13001 5' -56.7 NC_003387.1 + 13713 0.78 0.117118
Target:  5'- gGCCCAGGcggcGCAGgGCGauCAGCCUGCGCa -3'
miRNA:   3'- -CGGGUUU----UGUCgCGC--GUUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 21691 0.78 0.123145
Target:  5'- cGCCCuggccgccuCGGCgaGCGCGGCCCGCGCc -3'
miRNA:   3'- -CGGGuuuu-----GUCG--CGCGUUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 10501 0.77 0.140651
Target:  5'- cGCCCAucGCGGUGCGCcggucgccguccuGCUCGCGCa -3'
miRNA:   3'- -CGGGUuuUGUCGCGCGu------------UGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 13578 0.77 0.146172
Target:  5'- cGCCCu---CGGCGCGgAACCUGUGCu -3'
miRNA:   3'- -CGGGuuuuGUCGCGCgUUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 50198 0.77 0.150235
Target:  5'- -aCCGGGACGGCaaCGaCGACCCGCGCGu -3'
miRNA:   3'- cgGGUUUUGUCGc-GC-GUUGGGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 34306 0.77 0.150235
Target:  5'- uGCCC-GAGCAGCccGCGCuGCCCGCGg- -3'
miRNA:   3'- -CGGGuUUUGUCG--CGCGuUGGGCGCgc -5'
13001 5' -56.7 NC_003387.1 + 1495 0.76 0.158672
Target:  5'- gGCCCAAGGuCAGCGUGCAccaGCCgGuCGUGa -3'
miRNA:   3'- -CGGGUUUU-GUCGCGCGU---UGGgC-GCGC- -5'
13001 5' -56.7 NC_003387.1 + 29405 0.76 0.170738
Target:  5'- cGCCCGccgggcgcaggaggAGGCcGcCGCaGCGGCCCGCGCGg -3'
miRNA:   3'- -CGGGU--------------UUUGuC-GCG-CGUUGGGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 36904 0.76 0.172129
Target:  5'- cGCCUcgguGACGcuguGCGCGUAGCCCaGCGCGa -3'
miRNA:   3'- -CGGGuu--UUGU----CGCGCGUUGGG-CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 21463 0.75 0.181658
Target:  5'- gGCCCc--GCuG-GCGCAGCCCGCGCc -3'
miRNA:   3'- -CGGGuuuUGuCgCGCGUUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 35555 0.75 0.181658
Target:  5'- cGCCC-AGGCGGCGCacCAGCUCaGCGCGg -3'
miRNA:   3'- -CGGGuUUUGUCGCGc-GUUGGG-CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 24186 0.75 0.202124
Target:  5'- gGCCCAAAACAGCG-GC-ACCUaugacgGCGCa -3'
miRNA:   3'- -CGGGUUUUGUCGCgCGuUGGG------CGCGc -5'
13001 5' -56.7 NC_003387.1 + 14085 0.75 0.202124
Target:  5'- cGCCgGAAcuGCAGCgccaGCGCGGCCUGCGgGc -3'
miRNA:   3'- -CGGgUUU--UGUCG----CGCGUUGGGCGCgC- -5'
13001 5' -56.7 NC_003387.1 + 17160 0.74 0.21309
Target:  5'- gGCCCGcgcuGAGCuGGUGCGCcGCCUGgGCGg -3'
miRNA:   3'- -CGGGU----UUUG-UCGCGCGuUGGGCgCGC- -5'
13001 5' -56.7 NC_003387.1 + 8193 0.74 0.218762
Target:  5'- aGCCCu--GCGGCGCcggGCGGCCCG-GCa -3'
miRNA:   3'- -CGGGuuuUGUCGCG---CGUUGGGCgCGc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.