Results 21 - 40 of 251 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13001 | 5' | -56.7 | NC_003387.1 | + | 45936 | 0.71 | 0.335898 |
Target: 5'- uGCCCG----AGCGUGUucgccgacGGCCCGCGCa -3' miRNA: 3'- -CGGGUuuugUCGCGCG--------UUGGGCGCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 25473 | 0.72 | 0.312284 |
Target: 5'- gGCUCAu-GCGGCGCauccugucggGCGACCUGCaGCGg -3' miRNA: 3'- -CGGGUuuUGUCGCG----------CGUUGGGCG-CGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 24186 | 0.75 | 0.202124 |
Target: 5'- gGCCCAAAACAGCG-GC-ACCUaugacgGCGCa -3' miRNA: 3'- -CGGGUUUUGUCGCgCGuUGGG------CGCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 13713 | 0.78 | 0.117118 |
Target: 5'- gGCCCAGGcggcGCAGgGCGauCAGCCUGCGCa -3' miRNA: 3'- -CGGGUUU----UGUCgCGC--GUUGGGCGCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 18321 | 0.7 | 0.386936 |
Target: 5'- cGCCCGGcAACGGCGUGgCcgucguGCCCGC-CGg -3' miRNA: 3'- -CGGGUU-UUGUCGCGC-Gu-----UGGGCGcGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 27179 | 0.71 | 0.358243 |
Target: 5'- uGCCCcu--CGGCgugugguggcgcgaGCGCAACCgGCGCa -3' miRNA: 3'- -CGGGuuuuGUCG--------------CGCGUUGGgCGCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 22938 | 0.72 | 0.297254 |
Target: 5'- cGCCgGAuACA-CGCGCAGCugaCCGCGUGg -3' miRNA: 3'- -CGGgUUuUGUcGCGCGUUG---GGCGCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 25903 | 0.83 | 0.05122 |
Target: 5'- cGUCCAGGGCGGCGCGCucaccGACCaccaGCGCGg -3' miRNA: 3'- -CGGGUUUUGUCGCGCG-----UUGGg---CGCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 15125 | 0.71 | 0.352351 |
Target: 5'- cGCCUGAccCuGUGCGCGACCCGauugcCGCGu -3' miRNA: 3'- -CGGGUUuuGuCGCGCGUUGGGC-----GCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 48140 | 0.83 | 0.049757 |
Target: 5'- aCCCGcgcGCAGCGCGCcaccgaGGCCCGCGCGg -3' miRNA: 3'- cGGGUuu-UGUCGCGCG------UUGGGCGCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 27926 | 0.72 | 0.297254 |
Target: 5'- uGCgCCAGGuCGGC-CGCGACCCGaGCGg -3' miRNA: 3'- -CG-GGUUUuGUCGcGCGUUGGGCgCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 42895 | 0.71 | 0.344054 |
Target: 5'- gGCCgGGGGcCAGCacaaaaGCGCAGCCUGCaGCGc -3' miRNA: 3'- -CGGgUUUU-GUCG------CGCGUUGGGCG-CGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 43668 | 0.72 | 0.289952 |
Target: 5'- cGCCgAGGAgGGCGaCGCGAUCCugGCGUGg -3' miRNA: 3'- -CGGgUUUUgUCGC-GCGUUGGG--CGCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 17160 | 0.74 | 0.21309 |
Target: 5'- gGCCCGcgcuGAGCuGGUGCGCcGCCUGgGCGg -3' miRNA: 3'- -CGGGU----UUUG-UCGCGCGuUGGGCgCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 1495 | 0.76 | 0.158672 |
Target: 5'- gGCCCAAGGuCAGCGUGCAccaGCCgGuCGUGa -3' miRNA: 3'- -CGGGUUUU-GUCGCGCGU---UGGgC-GCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 21691 | 0.78 | 0.123145 |
Target: 5'- cGCCCuggccgccuCGGCgaGCGCGGCCCGCGCc -3' miRNA: 3'- -CGGGuuuu-----GUCG--CGCGUUGGGCGCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 2934 | 0.7 | 0.395925 |
Target: 5'- uGUCgCGGuuCGGCGC-CAACCCGCaGCGc -3' miRNA: 3'- -CGG-GUUuuGUCGCGcGUUGGGCG-CGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 23409 | 0.7 | 0.386936 |
Target: 5'- uGCCCGAca-AGCGCGgcGCCUGCGUc -3' miRNA: 3'- -CGGGUUuugUCGCGCguUGGGCGCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 41965 | 0.71 | 0.360789 |
Target: 5'- cGCCagcgaGGAGCuGCGCGCGGaggCCGcCGCGg -3' miRNA: 3'- -CGGg----UUUUGuCGCGCGUUg--GGC-GCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 40011 | 0.71 | 0.360789 |
Target: 5'- aCCUAGAGCcccGCGgGC-GCUCGCGCGg -3' miRNA: 3'- cGGGUUUUGu--CGCgCGuUGGGCGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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