miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13002 3' -56.9 NC_003387.1 + 12111 0.66 0.637478
Target:  5'- cACGCcACcgGCCCGCCuCGAaaugcGGUGuGCu -3'
miRNA:   3'- -UGUGuUGa-UGGGCGG-GCUga---CCAC-CG- -5'
13002 3' -56.9 NC_003387.1 + 481 0.66 0.637478
Target:  5'- gGCGCgAGCUGCUCGUCgCGAUgcgcgcccGcGUGGCg -3'
miRNA:   3'- -UGUG-UUGAUGGGCGG-GCUGa-------C-CACCG- -5'
13002 3' -56.9 NC_003387.1 + 21710 0.66 0.637478
Target:  5'- aGCGCG---GCCCGCgCCGAcCUGGUcGUg -3'
miRNA:   3'- -UGUGUugaUGGGCG-GGCU-GACCAcCG- -5'
13002 3' -56.9 NC_003387.1 + 31675 0.66 0.637478
Target:  5'- uACGCGGCgu-UCGaCgCCGACUGGUcaGGCg -3'
miRNA:   3'- -UGUGUUGaugGGC-G-GGCUGACCA--CCG- -5'
13002 3' -56.9 NC_003387.1 + 43377 0.66 0.625469
Target:  5'- -gAUAGCUcGCCugcacggCGCCCGGCUGGUcGUg -3'
miRNA:   3'- ugUGUUGA-UGG-------GCGGGCUGACCAcCG- -5'
13002 3' -56.9 NC_003387.1 + 19264 0.66 0.615647
Target:  5'- -gGCGACUucGgCCGCCUuGCgcgaggUGGUGGCg -3'
miRNA:   3'- ugUGUUGA--UgGGCGGGcUG------ACCACCG- -5'
13002 3' -56.9 NC_003387.1 + 50524 0.66 0.615647
Target:  5'- aGCACGagGC-ACCCcugaGCCCG-C-GGUGGCu -3'
miRNA:   3'- -UGUGU--UGaUGGG----CGGGCuGaCCACCG- -5'
13002 3' -56.9 NC_003387.1 + 6142 0.66 0.615647
Target:  5'- -gGCGACccUGCCCGaggCCGAUUGGgucGGUg -3'
miRNA:   3'- ugUGUUG--AUGGGCg--GGCUGACCa--CCG- -5'
13002 3' -56.9 NC_003387.1 + 49491 0.66 0.609106
Target:  5'- cCGguGC-GCCCGCCCGGCgucgacgugucgcaaUGG-GGCu -3'
miRNA:   3'- uGUguUGaUGGGCGGGCUG---------------ACCaCCG- -5'
13002 3' -56.9 NC_003387.1 + 5187 0.66 0.604748
Target:  5'- gGCAgGGC-AUCaagGCCCGGCU-GUGGCg -3'
miRNA:   3'- -UGUgUUGaUGGg--CGGGCUGAcCACCG- -5'
13002 3' -56.9 NC_003387.1 + 37708 0.66 0.604748
Target:  5'- -gACGACgccgACCCGCgCGACaagccgagGGcGGCa -3'
miRNA:   3'- ugUGUUGa---UGGGCGgGCUGa-------CCaCCG- -5'
13002 3' -56.9 NC_003387.1 + 42279 0.66 0.593873
Target:  5'- cCGCAGCUACgugcgacuauuUCGcCCCGACgaucaagGcGUGGCg -3'
miRNA:   3'- uGUGUUGAUG-----------GGC-GGGCUGa------C-CACCG- -5'
13002 3' -56.9 NC_003387.1 + 19724 0.66 0.593873
Target:  5'- gUACAGCacgGCCCGCUCGAacgcgGGCa -3'
miRNA:   3'- uGUGUUGa--UGGGCGGGCUgaccaCCG- -5'
13002 3' -56.9 NC_003387.1 + 26782 0.66 0.593873
Target:  5'- -aGCAGCgccaGCaCCGCCuCGacgaggccgcGCUGGUGGUc -3'
miRNA:   3'- ugUGUUGa---UG-GGCGG-GC----------UGACCACCG- -5'
13002 3' -56.9 NC_003387.1 + 30520 0.66 0.583029
Target:  5'- cCGCGAgaGCCCGCuuG---GGUGGCc -3'
miRNA:   3'- uGUGUUgaUGGGCGggCugaCCACCG- -5'
13002 3' -56.9 NC_003387.1 + 48292 0.67 0.572225
Target:  5'- gACGCAgaguucGCcGCCCGCCuCGACgaaaucgaGGcGGCg -3'
miRNA:   3'- -UGUGU------UGaUGGGCGG-GCUGa-------CCaCCG- -5'
13002 3' -56.9 NC_003387.1 + 3895 0.67 0.568993
Target:  5'- gGCGCcGCUGCCCGaCCCuGACcgccugGGUgcuaacgcccggugGGCg -3'
miRNA:   3'- -UGUGuUGAUGGGC-GGG-CUGa-----CCA--------------CCG- -5'
13002 3' -56.9 NC_003387.1 + 470 0.67 0.561469
Target:  5'- gGCGCGGCgUugCCGUcagucUCGACUGGUG-Cu -3'
miRNA:   3'- -UGUGUUG-AugGGCG-----GGCUGACCACcG- -5'
13002 3' -56.9 NC_003387.1 + 14972 0.67 0.561469
Target:  5'- -gACGGCaagauCCCGCCgCGcAC-GGUGGCg -3'
miRNA:   3'- ugUGUUGau---GGGCGG-GC-UGaCCACCG- -5'
13002 3' -56.9 NC_003387.1 + 39219 0.67 0.55077
Target:  5'- -aGCGACUccaccggcgaACCCGCCgGGgCUgucGGUGGUg -3'
miRNA:   3'- ugUGUUGA----------UGGGCGGgCU-GA---CCACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.