miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13003 3' -56.8 NC_003387.1 + 16202 0.72 0.279991
Target:  5'- uGCuGUCGGGGCucagCCUGCGcUGCCauaUGCCg -3'
miRNA:   3'- -CGcUAGUUCCG----GGACGC-AUGGg--ACGG- -5'
13003 3' -56.8 NC_003387.1 + 16885 0.66 0.637478
Target:  5'- gGCGAUgcacgacauagcCGAcGCgCUGCaGUACCCgGCCg -3'
miRNA:   3'- -CGCUA------------GUUcCGgGACG-CAUGGGaCGG- -5'
13003 3' -56.8 NC_003387.1 + 17072 0.75 0.184792
Target:  5'- cGCGGUCGAGGUCg-GCcaGUGCCCgcccgGCCg -3'
miRNA:   3'- -CGCUAGUUCCGGgaCG--CAUGGGa----CGG- -5'
13003 3' -56.8 NC_003387.1 + 17441 0.66 0.648392
Target:  5'- gGCGAaCGauAGGCgCCaGuCGUACCCgcggcGCCa -3'
miRNA:   3'- -CGCUaGU--UCCG-GGaC-GCAUGGGa----CGG- -5'
13003 3' -56.8 NC_003387.1 + 18475 0.67 0.572225
Target:  5'- gGCGAUCAGccGGUCgaGCGc-CCCgaggGCCu -3'
miRNA:   3'- -CGCUAGUU--CCGGgaCGCauGGGa---CGG- -5'
13003 3' -56.8 NC_003387.1 + 18891 0.7 0.37439
Target:  5'- uCGAUCAGGcucgggaucuuGCCCaGCGggaUGCCCUGCg -3'
miRNA:   3'- cGCUAGUUC-----------CGGGaCGC---AUGGGACGg -5'
13003 3' -56.8 NC_003387.1 + 19066 0.67 0.56147
Target:  5'- cGCcgcCAGGGCCacgGUGaUGCCCUGCa -3'
miRNA:   3'- -CGcuaGUUCCGGga-CGC-AUGGGACGg -5'
13003 3' -56.8 NC_003387.1 + 19443 0.67 0.583029
Target:  5'- gGCG-UUAAGGCCgUGCGgGCgCgUGUCa -3'
miRNA:   3'- -CGCuAGUUCCGGgACGCaUG-GgACGG- -5'
13003 3' -56.8 NC_003387.1 + 22603 0.71 0.324647
Target:  5'- aCGGUCGaagcucAGGCCCUugcgGCgGUACCC-GCCg -3'
miRNA:   3'- cGCUAGU------UCCGGGA----CG-CAUGGGaCGG- -5'
13003 3' -56.8 NC_003387.1 + 23230 0.7 0.36575
Target:  5'- cCGGUCGAcGCCCaucucgcggGcCGUGCCCUGCUc -3'
miRNA:   3'- cGCUAGUUcCGGGa--------C-GCAUGGGACGG- -5'
13003 3' -56.8 NC_003387.1 + 24823 0.73 0.240358
Target:  5'- cCGGUCAAGGCCgC-GUGUGCgCUGUCu -3'
miRNA:   3'- cGCUAGUUCCGG-GaCGCAUGgGACGG- -5'
13003 3' -56.8 NC_003387.1 + 25114 0.7 0.410305
Target:  5'- gGUGucGUCGAGGCCCU-CGUACCagcgGCa -3'
miRNA:   3'- -CGC--UAGUUCCGGGAcGCAUGGga--CGg -5'
13003 3' -56.8 NC_003387.1 + 25154 0.67 0.56147
Target:  5'- cCGAUCGGGGCUCgugucaGCG-GCCCgagGCg -3'
miRNA:   3'- cGCUAGUUCCGGGa-----CGCaUGGGa--CGg -5'
13003 3' -56.8 NC_003387.1 + 25465 0.66 0.648391
Target:  5'- cGCG-UCGcGGCUCaUGCGgcgcAUCCUGUCg -3'
miRNA:   3'- -CGCuAGUuCCGGG-ACGCa---UGGGACGG- -5'
13003 3' -56.8 NC_003387.1 + 27111 0.67 0.583029
Target:  5'- gGCGuauUCAcgAGGCaCUGCGggucgagGCCgUGCCc -3'
miRNA:   3'- -CGCu--AGU--UCCGgGACGCa------UGGgACGG- -5'
13003 3' -56.8 NC_003387.1 + 27199 0.67 0.572225
Target:  5'- cGCGAgcgCAAccGGCgcaagUCUGCGgucgACCCgGCCg -3'
miRNA:   3'- -CGCUa--GUU--CCG-----GGACGCa---UGGGaCGG- -5'
13003 3' -56.8 NC_003387.1 + 27249 0.7 0.383167
Target:  5'- cGCGGUCGAggcGGCCCgGCaUGCCUgGUCg -3'
miRNA:   3'- -CGCUAGUU---CCGGGaCGcAUGGGaCGG- -5'
13003 3' -56.8 NC_003387.1 + 27949 0.73 0.266231
Target:  5'- uCGGUCGGGGCgCUcgGCGUGCUCggcuugGCCg -3'
miRNA:   3'- cGCUAGUUCCGgGA--CGCAUGGGa-----CGG- -5'
13003 3' -56.8 NC_003387.1 + 29703 0.69 0.438605
Target:  5'- -aGGUCGAGGCgCUcgGCGgcGCCCagGCCg -3'
miRNA:   3'- cgCUAGUUCCGgGA--CGCa-UGGGa-CGG- -5'
13003 3' -56.8 NC_003387.1 + 29801 0.68 0.488132
Target:  5'- cCGAUCGAGGaCUaGCGUcACCCgcccgGCCc -3'
miRNA:   3'- cGCUAGUUCCgGGaCGCA-UGGGa----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.