miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13003 3' -56.8 NC_003387.1 + 1481 0.67 0.583029
Target:  5'- gGCGAUgggCAuauGGCCCaaggucaGCGUGCaCCaGCCg -3'
miRNA:   3'- -CGCUA---GUu--CCGGGa------CGCAUG-GGaCGG- -5'
13003 3' -56.8 NC_003387.1 + 3405 0.67 0.539074
Target:  5'- cGCGAUCAugcucgGGGCCgUgcccucgGCGUGCUCgGCg -3'
miRNA:   3'- -CGCUAGU------UCCGGgA-------CGCAUGGGaCGg -5'
13003 3' -56.8 NC_003387.1 + 3622 0.67 0.576541
Target:  5'- uGCGcGUCGAGGUgcucgacuucguacgCCUGCGcgccgcgAgCCUGCCc -3'
miRNA:   3'- -CGC-UAGUUCCG---------------GGACGCa------UgGGACGG- -5'
13003 3' -56.8 NC_003387.1 + 3967 0.68 0.488132
Target:  5'- cGCGcugCAAGGCUCgGCG-ACCCgcggGUCa -3'
miRNA:   3'- -CGCua-GUUCCGGGaCGCaUGGGa---CGG- -5'
13003 3' -56.8 NC_003387.1 + 4013 0.67 0.572225
Target:  5'- gGCGAUCAgccAGGCCCaaaagaaccGCGUGgCg-GCCu -3'
miRNA:   3'- -CGCUAGU---UCCGGGa--------CGCAUgGgaCGG- -5'
13003 3' -56.8 NC_003387.1 + 4771 0.7 0.383167
Target:  5'- cGCGGugcuUCGcGGCCCacacgGCGUcguGCCCaUGCCu -3'
miRNA:   3'- -CGCU----AGUuCCGGGa----CGCA---UGGG-ACGG- -5'
13003 3' -56.8 NC_003387.1 + 5553 0.66 0.604749
Target:  5'- gGCGAccacCAGGGCCaCcGCGgUGCCC-GCUa -3'
miRNA:   3'- -CGCUa---GUUCCGG-GaCGC-AUGGGaCGG- -5'
13003 3' -56.8 NC_003387.1 + 5702 0.67 0.583029
Target:  5'- gGCGGUCAAGG----GCGUGCCCgcGUCg -3'
miRNA:   3'- -CGCUAGUUCCgggaCGCAUGGGa-CGG- -5'
13003 3' -56.8 NC_003387.1 + 6382 0.7 0.401127
Target:  5'- cGCGggCGAcGCCUUGCGUgggcgGCCCcgcuUGCCc -3'
miRNA:   3'- -CGCuaGUUcCGGGACGCA-----UGGG----ACGG- -5'
13003 3' -56.8 NC_003387.1 + 6780 0.66 0.648391
Target:  5'- -aGAUCAAccuGGCCgaGCGcgacauggucGCCCUGCg -3'
miRNA:   3'- cgCUAGUU---CCGGgaCGCa---------UGGGACGg -5'
13003 3' -56.8 NC_003387.1 + 6958 0.68 0.488132
Target:  5'- gGCGggCAGGcGCCaCaGCGcGCCCUcgGCCa -3'
miRNA:   3'- -CGCuaGUUC-CGG-GaCGCaUGGGA--CGG- -5'
13003 3' -56.8 NC_003387.1 + 7035 0.67 0.529568
Target:  5'- cGCGuUCAacggcAGGCCCggccGCucGCCCUGaCCg -3'
miRNA:   3'- -CGCuAGU-----UCCGGGa---CGcaUGGGAC-GG- -5'
13003 3' -56.8 NC_003387.1 + 7132 0.69 0.458081
Target:  5'- uCGAUCAgccacgcgAGGCCCgGCuccucgGCCgUGCCg -3'
miRNA:   3'- cGCUAGU--------UCCGGGaCGca----UGGgACGG- -5'
13003 3' -56.8 NC_003387.1 + 7760 0.67 0.529568
Target:  5'- gGCGAUCGcGGCCUgagccGCGgcCUgaGCCu -3'
miRNA:   3'- -CGCUAGUuCCGGGa----CGCauGGgaCGG- -5'
13003 3' -56.8 NC_003387.1 + 9914 0.66 0.604749
Target:  5'- cGCcGUCGGGGCUCggcugccaccGCGUGCCUUuCCa -3'
miRNA:   3'- -CGcUAGUUCCGGGa---------CGCAUGGGAcGG- -5'
13003 3' -56.8 NC_003387.1 + 11283 0.68 0.478009
Target:  5'- uCGAUCAAGGCuCUUGCG-ACCg-GCg -3'
miRNA:   3'- cGCUAGUUCCG-GGACGCaUGGgaCGg -5'
13003 3' -56.8 NC_003387.1 + 11411 0.66 0.615647
Target:  5'- cGCGAUCGgccccgAGGUgCUGUcgucgGUGCUCgUGCCc -3'
miRNA:   3'- -CGCUAGU------UCCGgGACG-----CAUGGG-ACGG- -5'
13003 3' -56.8 NC_003387.1 + 11514 0.71 0.357249
Target:  5'- aCGAUCGucGgCCUGCGUgucGCCCUGUUc -3'
miRNA:   3'- cGCUAGUucCgGGACGCA---UGGGACGG- -5'
13003 3' -56.8 NC_003387.1 + 12348 0.7 0.401127
Target:  5'- cCGAcgUCGAGGCCCU-UGgcCCCgGCCg -3'
miRNA:   3'- cGCU--AGUUCCGGGAcGCauGGGaCGG- -5'
13003 3' -56.8 NC_003387.1 + 15183 0.68 0.488132
Target:  5'- gGUGAUCGacgaggAGGCCC-GC--GCCCgGCCg -3'
miRNA:   3'- -CGCUAGU------UCCGGGaCGcaUGGGaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.