miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13003 3' -56.8 NC_003387.1 + 52034 1.14 0.000298
Target:  5'- gGCGAUCAAGGCCCUGCGUACCCUGCCg -3'
miRNA:   3'- -CGCUAGUUCCGGGACGCAUGGGACGG- -5'
13003 3' -56.8 NC_003387.1 + 29801 0.68 0.488132
Target:  5'- cCGAUCGAGGaCUaGCGUcACCCgcccgGCCc -3'
miRNA:   3'- cGCUAGUUCCgGGaCGCA-UGGGa----CGG- -5'
13003 3' -56.8 NC_003387.1 + 33411 0.67 0.572225
Target:  5'- aCGcgCGAGGCCgUUGUGcgGCUgUGCCu -3'
miRNA:   3'- cGCuaGUUCCGG-GACGCa-UGGgACGG- -5'
13003 3' -56.8 NC_003387.1 + 25465 0.66 0.648391
Target:  5'- cGCG-UCGcGGCUCaUGCGgcgcAUCCUGUCg -3'
miRNA:   3'- -CGCuAGUuCCGGG-ACGCa---UGGGACGG- -5'
13003 3' -56.8 NC_003387.1 + 49743 0.71 0.340666
Target:  5'- aGCGccucGUCGAGGCCCcgaGCGagGCCCaUGCg -3'
miRNA:   3'- -CGC----UAGUUCCGGGa--CGCa-UGGG-ACGg -5'
13003 3' -56.8 NC_003387.1 + 11514 0.71 0.357249
Target:  5'- aCGAUCGucGgCCUGCGUgucGCCCUGUUc -3'
miRNA:   3'- cGCUAGUucCgGGACGCA---UGGGACGG- -5'
13003 3' -56.8 NC_003387.1 + 27249 0.7 0.383167
Target:  5'- cGCGGUCGAggcGGCCCgGCaUGCCUgGUCg -3'
miRNA:   3'- -CGCUAGUU---CCGGGaCGcAUGGGaCGG- -5'
13003 3' -56.8 NC_003387.1 + 37824 0.69 0.42715
Target:  5'- cGCGAUC-GGGCCgaGCGaggucgggcacCCCUGCg -3'
miRNA:   3'- -CGCUAGuUCCGGgaCGCau---------GGGACGg -5'
13003 3' -56.8 NC_003387.1 + 11283 0.68 0.478009
Target:  5'- uCGAUCAAGGCuCUUGCG-ACCg-GCg -3'
miRNA:   3'- cGCUAGUUCCG-GGACGCaUGGgaCGg -5'
13003 3' -56.8 NC_003387.1 + 15183 0.68 0.488132
Target:  5'- gGUGAUCGacgaggAGGCCC-GC--GCCCgGCCg -3'
miRNA:   3'- -CGCUAGU------UCCGGGaCGcaUGGGaCGG- -5'
13003 3' -56.8 NC_003387.1 + 48169 0.68 0.479016
Target:  5'- cGCGGUCGcgcaggcgcAGGCCC-GCaagGUGCCCgcaccggcggcggcgGCCg -3'
miRNA:   3'- -CGCUAGU---------UCCGGGaCG---CAUGGGa--------------CGG- -5'
13003 3' -56.8 NC_003387.1 + 45674 0.69 0.458081
Target:  5'- cCGGUCAGGG-CgaGCGgccgGgCCUGCCg -3'
miRNA:   3'- cGCUAGUUCCgGgaCGCa---UgGGACGG- -5'
13003 3' -56.8 NC_003387.1 + 38608 0.77 0.140878
Target:  5'- gGUGAUCGAGGCgCUGUucgGCCCgcagGCCg -3'
miRNA:   3'- -CGCUAGUUCCGgGACGca-UGGGa---CGG- -5'
13003 3' -56.8 NC_003387.1 + 32505 0.68 0.488132
Target:  5'- uGCGA-CGAcuGCCgCUGCGUgcacGCCCgGCCg -3'
miRNA:   3'- -CGCUaGUUc-CGG-GACGCA----UGGGaCGG- -5'
13003 3' -56.8 NC_003387.1 + 24823 0.73 0.240358
Target:  5'- cCGGUCAAGGCCgC-GUGUGCgCUGUCu -3'
miRNA:   3'- cGCUAGUUCCGG-GaCGCAUGgGACGG- -5'
13003 3' -56.8 NC_003387.1 + 29703 0.69 0.438605
Target:  5'- -aGGUCGAGGCgCUcgGCGgcGCCCagGCCg -3'
miRNA:   3'- cgCUAGUUCCGgGA--CGCa-UGGGa-CGG- -5'
13003 3' -56.8 NC_003387.1 + 3967 0.68 0.488132
Target:  5'- cGCGcugCAAGGCUCgGCG-ACCCgcggGUCa -3'
miRNA:   3'- -CGCua-GUUCCGGGaCGCaUGGGa---CGG- -5'
13003 3' -56.8 NC_003387.1 + 49676 0.67 0.55077
Target:  5'- aGCGGUCGAGcaguGCUgaGCGUgcaGCCCggcaugaacgUGCCg -3'
miRNA:   3'- -CGCUAGUUC----CGGgaCGCA---UGGG----------ACGG- -5'
13003 3' -56.8 NC_003387.1 + 37276 0.73 0.273041
Target:  5'- gGCGGUCAAGGCgCCUGgCGcGCUCgucgGCg -3'
miRNA:   3'- -CGCUAGUUCCG-GGAC-GCaUGGGa---CGg -5'
13003 3' -56.8 NC_003387.1 + 46657 0.7 0.36575
Target:  5'- gGCGGUCGucauGGUgcgcucgaaCCUGCccggcGCCCUGCCg -3'
miRNA:   3'- -CGCUAGUu---CCG---------GGACGca---UGGGACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.