miRNA display CGI


Results 1 - 20 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13003 3' -56.8 NC_003387.1 + 52034 1.14 0.000298
Target:  5'- gGCGAUCAAGGCCCUGCGUACCCUGCCg -3'
miRNA:   3'- -CGCUAGUUCCGGGACGCAUGGGACGG- -5'
13003 3' -56.8 NC_003387.1 + 38608 0.77 0.140878
Target:  5'- gGUGAUCGAGGCgCUGUucgGCCCgcagGCCg -3'
miRNA:   3'- -CGCUAGUUCCGgGACGca-UGGGa---CGG- -5'
13003 3' -56.8 NC_003387.1 + 17072 0.75 0.184792
Target:  5'- cGCGGUCGAGGUCg-GCcaGUGCCCgcccgGCCg -3'
miRNA:   3'- -CGCUAGUUCCGGgaCG--CAUGGGa----CGG- -5'
13003 3' -56.8 NC_003387.1 + 24823 0.73 0.240358
Target:  5'- cCGGUCAAGGCCgC-GUGUGCgCUGUCu -3'
miRNA:   3'- cGCUAGUUCCGG-GaCGCAUGgGACGG- -5'
13003 3' -56.8 NC_003387.1 + 27949 0.73 0.266231
Target:  5'- uCGGUCGGGGCgCUcgGCGUGCUCggcuugGCCg -3'
miRNA:   3'- cGCUAGUUCCGgGA--CGCAUGGGa-----CGG- -5'
13003 3' -56.8 NC_003387.1 + 37276 0.73 0.273041
Target:  5'- gGCGGUCAAGGCgCCUGgCGcGCUCgucgGCg -3'
miRNA:   3'- -CGCUAGUUCCG-GGAC-GCaUGGGa---CGg -5'
13003 3' -56.8 NC_003387.1 + 32130 0.73 0.273042
Target:  5'- aGCGAaCGauAGGCCCgaaaUGUgGUGCCCUGCa -3'
miRNA:   3'- -CGCUaGU--UCCGGG----ACG-CAUGGGACGg -5'
13003 3' -56.8 NC_003387.1 + 39934 0.72 0.279991
Target:  5'- cGUGAUCcauguGGUUCUGCGUGuCgCUGCCg -3'
miRNA:   3'- -CGCUAGuu---CCGGGACGCAU-GgGACGG- -5'
13003 3' -56.8 NC_003387.1 + 16202 0.72 0.279991
Target:  5'- uGCuGUCGGGGCucagCCUGCGcUGCCauaUGCCg -3'
miRNA:   3'- -CGcUAGUUCCG----GGACGC-AUGGg--ACGG- -5'
13003 3' -56.8 NC_003387.1 + 22603 0.71 0.324647
Target:  5'- aCGGUCGaagcucAGGCCCUugcgGCgGUACCC-GCCg -3'
miRNA:   3'- cGCUAGU------UCCGGGA----CG-CAUGGGaCGG- -5'
13003 3' -56.8 NC_003387.1 + 49743 0.71 0.340666
Target:  5'- aGCGccucGUCGAGGCCCcgaGCGagGCCCaUGCg -3'
miRNA:   3'- -CGC----UAGUUCCGGGa--CGCa-UGGG-ACGg -5'
13003 3' -56.8 NC_003387.1 + 41107 0.71 0.348887
Target:  5'- gGCGGUCGcGGCCUUcGUGaUGCCCgaccacacgGCCa -3'
miRNA:   3'- -CGCUAGUuCCGGGA-CGC-AUGGGa--------CGG- -5'
13003 3' -56.8 NC_003387.1 + 11514 0.71 0.357249
Target:  5'- aCGAUCGucGgCCUGCGUgucGCCCUGUUc -3'
miRNA:   3'- cGCUAGUucCgGGACGCA---UGGGACGG- -5'
13003 3' -56.8 NC_003387.1 + 23230 0.7 0.36575
Target:  5'- cCGGUCGAcGCCCaucucgcggGcCGUGCCCUGCUc -3'
miRNA:   3'- cGCUAGUUcCGGGa--------C-GCAUGGGACGG- -5'
13003 3' -56.8 NC_003387.1 + 46657 0.7 0.36575
Target:  5'- gGCGGUCGucauGGUgcgcucgaaCCUGCccggcGCCCUGCCg -3'
miRNA:   3'- -CGCUAGUu---CCG---------GGACGca---UGGGACGG- -5'
13003 3' -56.8 NC_003387.1 + 18891 0.7 0.37439
Target:  5'- uCGAUCAGGcucgggaucuuGCCCaGCGggaUGCCCUGCg -3'
miRNA:   3'- cGCUAGUUC-----------CGGGaCGC---AUGGGACGg -5'
13003 3' -56.8 NC_003387.1 + 4771 0.7 0.383167
Target:  5'- cGCGGugcuUCGcGGCCCacacgGCGUcguGCCCaUGCCu -3'
miRNA:   3'- -CGCU----AGUuCCGGGa----CGCA---UGGG-ACGG- -5'
13003 3' -56.8 NC_003387.1 + 49981 0.7 0.383167
Target:  5'- cGCGcacguUCAccGGCUgCUGCGUGgCCUGCCc -3'
miRNA:   3'- -CGCu----AGUu-CCGG-GACGCAUgGGACGG- -5'
13003 3' -56.8 NC_003387.1 + 27249 0.7 0.383167
Target:  5'- cGCGGUCGAggcGGCCCgGCaUGCCUgGUCg -3'
miRNA:   3'- -CGCUAGUU---CCGGGaCGcAUGGGaCGG- -5'
13003 3' -56.8 NC_003387.1 + 34979 0.7 0.39208
Target:  5'- aGCGGUgu-GGCCCcugGCG-GCCCgGCCg -3'
miRNA:   3'- -CGCUAguuCCGGGa--CGCaUGGGaCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.