Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13003 | 5' | -55.8 | NC_003387.1 | + | 38904 | 0.66 | 0.649366 |
Target: 5'- uGGAGCGg---GUGCGGGCgUUUGCUCGc -3' miRNA: 3'- -CCUCGUguagCACGUCCG-GGAUGAGC- -5' |
|||||||
13003 | 5' | -55.8 | NC_003387.1 | + | 39479 | 0.66 | 0.649366 |
Target: 5'- uGGuGCGCAgaUCGcUGUcGGCC-UGCUCGg -3' miRNA: 3'- -CCuCGUGU--AGC-ACGuCCGGgAUGAGC- -5' |
|||||||
13003 | 5' | -55.8 | NC_003387.1 | + | 39692 | 0.66 | 0.682222 |
Target: 5'- cGGcguuGCGCAgcgaCGUGCGGGCgCUG-UCGa -3' miRNA: 3'- -CCu---CGUGUa---GCACGUCCGgGAUgAGC- -5' |
|||||||
13003 | 5' | -55.8 | NC_003387.1 | + | 42411 | 0.75 | 0.220708 |
Target: 5'- aGGAGCAguUCGaGCAGGCCCgcaaGgUCGu -3' miRNA: 3'- -CCUCGUguAGCaCGUCCGGGa---UgAGC- -5' |
|||||||
13003 | 5' | -55.8 | NC_003387.1 | + | 51221 | 0.68 | 0.561759 |
Target: 5'- --uGCACGUCGgccGC-GGCCUggUGCUCGa -3' miRNA: 3'- ccuCGUGUAGCa--CGuCCGGG--AUGAGC- -5' |
|||||||
13003 | 5' | -55.8 | NC_003387.1 | + | 51599 | 0.68 | 0.540254 |
Target: 5'- cGAGCACAcCGUGC--GCCCUagcgucGCUCa -3' miRNA: 3'- cCUCGUGUaGCACGucCGGGA------UGAGc -5' |
|||||||
13003 | 5' | -55.8 | NC_003387.1 | + | 52069 | 1.11 | 0.000593 |
Target: 5'- gGGAGCACAUCGUGCAGGCCCUACUCGa -3' miRNA: 3'- -CCUCGUGUAGCACGUCCGGGAUGAGC- -5' |
|||||||
13003 | 5' | -55.8 | NC_003387.1 | + | 52550 | 0.78 | 0.14719 |
Target: 5'- cGAGCACcgucuugccGUCGgccaGCAGGCCCaGCUCGg -3' miRNA: 3'- cCUCGUG---------UAGCa---CGUCCGGGaUGAGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home