miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13005 3' -56.8 NC_003387.1 + 49166 0.68 0.555215
Target:  5'- cCAGCGCGcAgGCGGUCGcGcaggcggcggCCGUCGa -3'
miRNA:   3'- -GUCGCGC-UgCGCUAGC-Caa--------GGCAGCg -5'
13005 3' -56.8 NC_003387.1 + 46957 0.68 0.555215
Target:  5'- gCGGCGa-GCGCGGcCGGUUCCGcuacaUGCg -3'
miRNA:   3'- -GUCGCgcUGCGCUaGCCAAGGCa----GCG- -5'
13005 3' -56.8 NC_003387.1 + 29580 0.68 0.555215
Target:  5'- uCGGCGUGACGuCGAUgacaccguugcCGGUgaggGUCGCg -3'
miRNA:   3'- -GUCGCGCUGC-GCUA-----------GCCAagg-CAGCG- -5'
13005 3' -56.8 NC_003387.1 + 22171 0.68 0.534234
Target:  5'- cCGGcCGCGGCgGCGGuccaugUCGGggcgcCCGUUGCa -3'
miRNA:   3'- -GUC-GCGCUG-CGCU------AGCCaa---GGCAGCG- -5'
13005 3' -56.8 NC_003387.1 + 37815 0.68 0.513541
Target:  5'- gCAGCaGCG-CGCGAUCGGg-CCGa-GCg -3'
miRNA:   3'- -GUCG-CGCuGCGCUAGCCaaGGCagCG- -5'
13005 3' -56.8 NC_003387.1 + 12709 0.68 0.513541
Target:  5'- -cGCGCGAgcgccCGCGGggcucuaGGUgCCGUCGUa -3'
miRNA:   3'- guCGCGCU-----GCGCUag-----CCAaGGCAGCG- -5'
13005 3' -56.8 NC_003387.1 + 12560 0.68 0.513541
Target:  5'- gGGCuCGACGaCGAUCGGgccgCCGacggugUCGCc -3'
miRNA:   3'- gUCGcGCUGC-GCUAGCCaa--GGC------AGCG- -5'
13005 3' -56.8 NC_003387.1 + 35885 0.69 0.503317
Target:  5'- -cGCGCGGCGUGAguuUCGGca--GUUGCa -3'
miRNA:   3'- guCGCGCUGCGCU---AGCCaaggCAGCG- -5'
13005 3' -56.8 NC_003387.1 + 21628 0.69 0.503317
Target:  5'- gGGUGCGuCGUGAUCGGaUUCaaaacaGcCGCa -3'
miRNA:   3'- gUCGCGCuGCGCUAGCC-AAGg-----CaGCG- -5'
13005 3' -56.8 NC_003387.1 + 25171 0.69 0.503317
Target:  5'- uCGGCuCGGCGCGGUggcccCGGcgCCGcCGCc -3'
miRNA:   3'- -GUCGcGCUGCGCUA-----GCCaaGGCaGCG- -5'
13005 3' -56.8 NC_003387.1 + 383 0.69 0.493183
Target:  5'- gCGGCGaauGAUGCGA-CGGaaCCGaUCGCg -3'
miRNA:   3'- -GUCGCg--CUGCGCUaGCCaaGGC-AGCG- -5'
13005 3' -56.8 NC_003387.1 + 44601 0.69 0.483144
Target:  5'- gAGUcgaGCGACGCcGUCGGg-CCGUgGCg -3'
miRNA:   3'- gUCG---CGCUGCGcUAGCCaaGGCAgCG- -5'
13005 3' -56.8 NC_003387.1 + 15939 0.69 0.477167
Target:  5'- uGGCGUG-CGCG-UCGGccagcgccgagugCCGUCGCu -3'
miRNA:   3'- gUCGCGCuGCGCuAGCCaa-----------GGCAGCG- -5'
13005 3' -56.8 NC_003387.1 + 3836 0.69 0.473203
Target:  5'- uCAGgGCGGCGCGGUaggCGGcgCCGaCGa -3'
miRNA:   3'- -GUCgCGCUGCGCUA---GCCaaGGCaGCg -5'
13005 3' -56.8 NC_003387.1 + 40345 0.69 0.453639
Target:  5'- gCAGCaGCGGCa-GAUUGcGggCCGUCGCg -3'
miRNA:   3'- -GUCG-CGCUGcgCUAGC-CaaGGCAGCG- -5'
13005 3' -56.8 NC_003387.1 + 26084 0.69 0.448817
Target:  5'- cCGGCGUGAcguauuuccagcaCGCGAUCgacuaccugcgccaGGUcggcgcgUCCGUCGCc -3'
miRNA:   3'- -GUCGCGCU-------------GCGCUAG--------------CCA-------AGGCAGCG- -5'
13005 3' -56.8 NC_003387.1 + 37753 0.7 0.444024
Target:  5'- -uGCGCGGCGgGAUCuug-CCGUCGa -3'
miRNA:   3'- guCGCGCUGCgCUAGccaaGGCAGCg -5'
13005 3' -56.8 NC_003387.1 + 37284 0.7 0.425142
Target:  5'- aGGCGCcuGGCGCGcucGUCGGcgCgGUCGUc -3'
miRNA:   3'- gUCGCG--CUGCGC---UAGCCaaGgCAGCG- -5'
13005 3' -56.8 NC_003387.1 + 34206 0.7 0.425142
Target:  5'- aCAGCGCcacguCGCGGUCGGUgcCCGgcucaaGCg -3'
miRNA:   3'- -GUCGCGcu---GCGCUAGCCAa-GGCag----CG- -5'
13005 3' -56.8 NC_003387.1 + 30956 0.7 0.415882
Target:  5'- gAGCGCGAacaGCGcGUCGGUggcgCUGaCGCc -3'
miRNA:   3'- gUCGCGCUg--CGC-UAGCCAa---GGCaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.