miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13005 3' -56.8 NC_003387.1 + 52325 1.12 0.00049
Target:  5'- aCAGCGCGACGCGAUCGGUUCCGUCGCa -3'
miRNA:   3'- -GUCGCGCUGCGCUAGCCAAGGCAGCG- -5'
13005 3' -56.8 NC_003387.1 + 33501 0.77 0.161944
Target:  5'- cCGGCGCGACGCuGAUCaGaUCCGUUGa -3'
miRNA:   3'- -GUCGCGCUGCG-CUAGcCaAGGCAGCg -5'
13005 3' -56.8 NC_003387.1 + 356 0.76 0.180146
Target:  5'- -cGCGCGgucgaucuGCGCGAgCGGUUCCG-CGCc -3'
miRNA:   3'- guCGCGC--------UGCGCUaGCCAAGGCaGCG- -5'
13005 3' -56.8 NC_003387.1 + 40959 0.74 0.239766
Target:  5'- -uGCGCGACGCGAUCGaggCCGagcugaaagCGCa -3'
miRNA:   3'- guCGCGCUGCGCUAGCcaaGGCa--------GCG- -5'
13005 3' -56.8 NC_003387.1 + 11884 0.73 0.292845
Target:  5'- gAGCGCGucGCGCacGAUCGGcgCCGUCu- -3'
miRNA:   3'- gUCGCGC--UGCG--CUAGCCaaGGCAGcg -5'
13005 3' -56.8 NC_003387.1 + 20474 0.73 0.30009
Target:  5'- uCGGCGaCGGCcagGCGGUCGGccagCuCGUCGCg -3'
miRNA:   3'- -GUCGC-GCUG---CGCUAGCCaa--G-GCAGCG- -5'
13005 3' -56.8 NC_003387.1 + 27935 0.72 0.307473
Target:  5'- uCGGcCGCGACcCGAgCGGUUCCGgcUCGUg -3'
miRNA:   3'- -GUC-GCGCUGcGCUaGCCAAGGC--AGCG- -5'
13005 3' -56.8 NC_003387.1 + 45146 0.72 0.322654
Target:  5'- aGGCGCGGCGC--UCGGaggUgGUCGCg -3'
miRNA:   3'- gUCGCGCUGCGcuAGCCaa-GgCAGCG- -5'
13005 3' -56.8 NC_003387.1 + 32843 0.72 0.322654
Target:  5'- -cGCGgGGCGgGG-CGGUUCCGcgUCGCc -3'
miRNA:   3'- guCGCgCUGCgCUaGCCAAGGC--AGCG- -5'
13005 3' -56.8 NC_003387.1 + 5147 0.71 0.354669
Target:  5'- gGGCGCucGGCGcCGGUCGGUgcagucaaUCCGUaUGCg -3'
miRNA:   3'- gUCGCG--CUGC-GCUAGCCA--------AGGCA-GCG- -5'
13005 3' -56.8 NC_003387.1 + 14665 0.7 0.396845
Target:  5'- gCGGCGCu-CGCucagccaccgcccGAUCGGggcgCCGUCGCc -3'
miRNA:   3'- -GUCGCGcuGCG-------------CUAGCCaa--GGCAGCG- -5'
13005 3' -56.8 NC_003387.1 + 20514 0.7 0.406747
Target:  5'- gCAGCGCGGCGuCGcgcucGUCGGUgaCGaCGCg -3'
miRNA:   3'- -GUCGCGCUGC-GC-----UAGCCAagGCaGCG- -5'
13005 3' -56.8 NC_003387.1 + 30956 0.7 0.415882
Target:  5'- gAGCGCGAacaGCGcGUCGGUggcgCUGaCGCc -3'
miRNA:   3'- gUCGCGCUg--CGC-UAGCCAa---GGCaGCG- -5'
13005 3' -56.8 NC_003387.1 + 37284 0.7 0.425142
Target:  5'- aGGCGCcuGGCGCGcucGUCGGcgCgGUCGUc -3'
miRNA:   3'- gUCGCG--CUGCGC---UAGCCaaGgCAGCG- -5'
13005 3' -56.8 NC_003387.1 + 34206 0.7 0.425142
Target:  5'- aCAGCGCcacguCGCGGUCGGUgcCCGgcucaaGCg -3'
miRNA:   3'- -GUCGCGcu---GCGCUAGCCAa-GGCag----CG- -5'
13005 3' -56.8 NC_003387.1 + 37753 0.7 0.444024
Target:  5'- -uGCGCGGCGgGAUCuug-CCGUCGa -3'
miRNA:   3'- guCGCGCUGCgCUAGccaaGGCAGCg -5'
13005 3' -56.8 NC_003387.1 + 26084 0.69 0.448817
Target:  5'- cCGGCGUGAcguauuuccagcaCGCGAUCgacuaccugcgccaGGUcggcgcgUCCGUCGCc -3'
miRNA:   3'- -GUCGCGCU-------------GCGCUAG--------------CCA-------AGGCAGCG- -5'
13005 3' -56.8 NC_003387.1 + 40345 0.69 0.453639
Target:  5'- gCAGCaGCGGCa-GAUUGcGggCCGUCGCg -3'
miRNA:   3'- -GUCG-CGCUGcgCUAGC-CaaGGCAGCG- -5'
13005 3' -56.8 NC_003387.1 + 3836 0.69 0.473203
Target:  5'- uCAGgGCGGCGCGGUaggCGGcgCCGaCGa -3'
miRNA:   3'- -GUCgCGCUGCGCUA---GCCaaGGCaGCg -5'
13005 3' -56.8 NC_003387.1 + 15939 0.69 0.477167
Target:  5'- uGGCGUG-CGCG-UCGGccagcgccgagugCCGUCGCu -3'
miRNA:   3'- gUCGCGCuGCGCuAGCCaa-----------GGCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.