miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13005 3' -56.8 NC_003387.1 + 52325 1.12 0.00049
Target:  5'- aCAGCGCGACGCGAUCGGUUCCGUCGCa -3'
miRNA:   3'- -GUCGCGCUGCGCUAGCCAAGGCAGCG- -5'
13005 3' -56.8 NC_003387.1 + 32235 0.67 0.586039
Target:  5'- gAGCGCGACGagcuggcCGAcCGccuggCCGUCGCc -3'
miRNA:   3'- gUCGCGCUGC-------GCUaGCcaa--GGCAGCG- -5'
13005 3' -56.8 NC_003387.1 + 40904 0.67 0.597821
Target:  5'- aGGcCGCGAuCGCGGUCGGg-CgGUgGCc -3'
miRNA:   3'- gUC-GCGCU-GCGCUAGCCaaGgCAgCG- -5'
13005 3' -56.8 NC_003387.1 + 51851 0.66 0.68379
Target:  5'- cCGGCGuCGcugcCGCGGUggcccCGGUgaucgcgaaggCCGUCGCg -3'
miRNA:   3'- -GUCGC-GCu---GCGCUA-----GCCAa----------GGCAGCG- -5'
13005 3' -56.8 NC_003387.1 + 32843 0.72 0.322654
Target:  5'- -cGCGgGGCGgGG-CGGUUCCGcgUCGCc -3'
miRNA:   3'- guCGCgCUGCgCUaGCCAAGGC--AGCG- -5'
13005 3' -56.8 NC_003387.1 + 45146 0.72 0.322654
Target:  5'- aGGCGCGGCGC--UCGGaggUgGUCGCg -3'
miRNA:   3'- gUCGCGCUGCGcuAGCCaa-GgCAGCG- -5'
13005 3' -56.8 NC_003387.1 + 37284 0.7 0.425142
Target:  5'- aGGCGCcuGGCGCGcucGUCGGcgCgGUCGUc -3'
miRNA:   3'- gUCGCG--CUGCGC---UAGCCaaGgCAGCG- -5'
13005 3' -56.8 NC_003387.1 + 26084 0.69 0.448817
Target:  5'- cCGGCGUGAcguauuuccagcaCGCGAUCgacuaccugcgccaGGUcggcgcgUCCGUCGCc -3'
miRNA:   3'- -GUCGCGCU-------------GCGCUAG--------------CCA-------AGGCAGCG- -5'
13005 3' -56.8 NC_003387.1 + 37815 0.68 0.513541
Target:  5'- gCAGCaGCG-CGCGAUCGGg-CCGa-GCg -3'
miRNA:   3'- -GUCG-CGCuGCGCUAGCCaaGGCagCG- -5'
13005 3' -56.8 NC_003387.1 + 43114 0.67 0.576431
Target:  5'- gAGCGCGACG-GcgCGGcgCCG-CGg -3'
miRNA:   3'- gUCGCGCUGCgCuaGCCaaGGCaGCg -5'
13005 3' -56.8 NC_003387.1 + 49166 0.68 0.555215
Target:  5'- cCAGCGCGcAgGCGGUCGcGcaggcggcggCCGUCGa -3'
miRNA:   3'- -GUCGCGC-UgCGCUAGC-Caa--------GGCAGCg -5'
13005 3' -56.8 NC_003387.1 + 25171 0.69 0.503317
Target:  5'- uCGGCuCGGCGCGGUggcccCGGcgCCGcCGCc -3'
miRNA:   3'- -GUCGcGCUGCGCUA-----GCCaaGGCaGCG- -5'
13005 3' -56.8 NC_003387.1 + 356 0.76 0.180146
Target:  5'- -cGCGCGgucgaucuGCGCGAgCGGUUCCG-CGCc -3'
miRNA:   3'- guCGCGC--------UGCGCUaGCCAAGGCaGCG- -5'
13005 3' -56.8 NC_003387.1 + 27501 0.67 0.565797
Target:  5'- gCGGCuGUGGCGCGAagaucCGGccgCCGcCGCg -3'
miRNA:   3'- -GUCG-CGCUGCGCUa----GCCaa-GGCaGCG- -5'
13005 3' -56.8 NC_003387.1 + 40959 0.74 0.239766
Target:  5'- -uGCGCGACGCGAUCGaggCCGagcugaaagCGCa -3'
miRNA:   3'- guCGCGCUGCGCUAGCcaaGGCa--------GCG- -5'
13005 3' -56.8 NC_003387.1 + 44601 0.69 0.483144
Target:  5'- gAGUcgaGCGACGCcGUCGGg-CCGUgGCg -3'
miRNA:   3'- gUCG---CGCUGCGcUAGCCaaGGCAgCG- -5'
13005 3' -56.8 NC_003387.1 + 22365 0.67 0.576431
Target:  5'- aGGCGCacccGGCGCagugUGGUUCCG-CGCc -3'
miRNA:   3'- gUCGCG----CUGCGcua-GCCAAGGCaGCG- -5'
13005 3' -56.8 NC_003387.1 + 14452 0.67 0.597821
Target:  5'- -cGCGC-ACGC-AUgGGUUCCGUUGg -3'
miRNA:   3'- guCGCGcUGCGcUAgCCAAGGCAGCg -5'
13005 3' -56.8 NC_003387.1 + 27935 0.72 0.307473
Target:  5'- uCGGcCGCGACcCGAgCGGUUCCGgcUCGUg -3'
miRNA:   3'- -GUC-GCGCUGcGCUaGCCAAGGC--AGCG- -5'
13005 3' -56.8 NC_003387.1 + 5147 0.71 0.354669
Target:  5'- gGGCGCucGGCGcCGGUCGGUgcagucaaUCCGUaUGCg -3'
miRNA:   3'- gUCGCG--CUGC-GCUAGCCA--------AGGCA-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.