miRNA display CGI


Results 1 - 20 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13007 3' -55.4 NC_003387.1 + 168 0.66 0.686916
Target:  5'- uCGcGCUCGGUcacgaaAGugACGCCC-GGCCg -3'
miRNA:   3'- -GCuCGAGUCG------UUugUGCGGGaCUGGa -5'
13007 3' -55.4 NC_003387.1 + 246 0.75 0.208573
Target:  5'- cCGAcauGCUCAGCGuGCAgUGCCCUGGCUg -3'
miRNA:   3'- -GCU---CGAGUCGUuUGU-GCGGGACUGGa -5'
13007 3' -55.4 NC_003387.1 + 321 0.7 0.429997
Target:  5'- cCGAGCcCGGCGAcacGCACGCCaaGAUCc -3'
miRNA:   3'- -GCUCGaGUCGUU---UGUGCGGgaCUGGa -5'
13007 3' -55.4 NC_003387.1 + 484 0.67 0.631518
Target:  5'- gCGAGCUgCucgucGCGAuGCGCGCCCgcguggcGACCg -3'
miRNA:   3'- -GCUCGA-Gu----CGUU-UGUGCGGGa------CUGGa -5'
13007 3' -55.4 NC_003387.1 + 1564 0.71 0.392308
Target:  5'- cCGAGgaCGGCGAAgcgccuaACGCCCUGGCg- -3'
miRNA:   3'- -GCUCgaGUCGUUUg------UGCGGGACUGga -5'
13007 3' -55.4 NC_003387.1 + 1584 0.66 0.675899
Target:  5'- --cGUgaaAGuCAGACGCGCCCUGGCa- -3'
miRNA:   3'- gcuCGag-UC-GUUUGUGCGGGACUGga -5'
13007 3' -55.4 NC_003387.1 + 1727 0.68 0.565145
Target:  5'- gCGuGCaCAGCAAACgaaaACGCCCccGGCCg -3'
miRNA:   3'- -GCuCGaGUCGUUUG----UGCGGGa-CUGGa -5'
13007 3' -55.4 NC_003387.1 + 2376 0.68 0.543371
Target:  5'- uGAGCguggUCGGCuaccGCaACGCCCUGGCg- -3'
miRNA:   3'- gCUCG----AGUCGuu--UG-UGCGGGACUGga -5'
13007 3' -55.4 NC_003387.1 + 3299 0.68 0.532586
Target:  5'- --uGCUCGGCGAcguucACGCGCCC--ACCUc -3'
miRNA:   3'- gcuCGAGUCGUU-----UGUGCGGGacUGGA- -5'
13007 3' -55.4 NC_003387.1 + 3388 0.66 0.697879
Target:  5'- cCGAcGCUCAGCuuGCGCGCgaucaugcUCggGGCCg -3'
miRNA:   3'- -GCU-CGAGUCGuuUGUGCG--------GGa-CUGGa -5'
13007 3' -55.4 NC_003387.1 + 3433 0.66 0.697879
Target:  5'- gCGuGCUCGGCGAGCAC-CUgggcGACCUu -3'
miRNA:   3'- -GCuCGAGUCGUUUGUGcGGga--CUGGA- -5'
13007 3' -55.4 NC_003387.1 + 3529 0.72 0.315752
Target:  5'- gCGGGCUCAGCAAcgucgacggccGC-CGCCUgcgcGACCg -3'
miRNA:   3'- -GCUCGAGUCGUU-----------UGuGCGGGa---CUGGa -5'
13007 3' -55.4 NC_003387.1 + 3621 0.69 0.511256
Target:  5'- cCGAGCUgAGCGGGCGugcggguauCGCCgUcGACCg -3'
miRNA:   3'- -GCUCGAgUCGUUUGU---------GCGGgA-CUGGa -5'
13007 3' -55.4 NC_003387.1 + 4137 0.67 0.584933
Target:  5'- gCGGGCuuuugggUCGGCGAggcgggcgucgauGCACGCCUggcacgUGACCUc -3'
miRNA:   3'- -GCUCG-------AGUCGUU-------------UGUGCGGG------ACUGGA- -5'
13007 3' -55.4 NC_003387.1 + 4424 0.66 0.650418
Target:  5'- cCGAGCUgGGCAAGgcguucgccgagccCGCGCCgaaGGCCg -3'
miRNA:   3'- -GCUCGAgUCGUUU--------------GUGCGGga-CUGGa -5'
13007 3' -55.4 NC_003387.1 + 6783 0.74 0.244549
Target:  5'- gCGGGCcgUCGGCGAACACGCUCgGGCa- -3'
miRNA:   3'- -GCUCG--AGUCGUUUGUGCGGGaCUGga -5'
13007 3' -55.4 NC_003387.1 + 6959 0.71 0.392308
Target:  5'- gCGGGCa-GGCGccacAGCGCGCCCUcGGCCa -3'
miRNA:   3'- -GCUCGagUCGU----UUGUGCGGGA-CUGGa -5'
13007 3' -55.4 NC_003387.1 + 7048 0.68 0.554226
Target:  5'- -aGGCcCGGCc-GCuCGCCCUGACCg -3'
miRNA:   3'- gcUCGaGUCGuuUGuGCGGGACUGGa -5'
13007 3' -55.4 NC_003387.1 + 7171 0.68 0.543371
Target:  5'- aCGAGCUggCGGCGGAU-CGCCUUG-CCg -3'
miRNA:   3'- -GCUCGA--GUCGUUUGuGCGGGACuGGa -5'
13007 3' -55.4 NC_003387.1 + 7274 0.68 0.532586
Target:  5'- aCGGGUUCGGCGugacguuCACGCCC-GGCg- -3'
miRNA:   3'- -GCUCGAGUCGUuu-----GUGCGGGaCUGga -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.