miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13007 3' -55.4 NC_003387.1 + 52601 1.08 0.000925
Target:  5'- gCGAGCUCAGCAAACACGCCCUGACCUg -3'
miRNA:   3'- -GCUCGAGUCGUUUGUGCGGGACUGGA- -5'
13007 3' -55.4 NC_003387.1 + 3621 0.69 0.511256
Target:  5'- cCGAGCUgAGCGGGCGugcggguauCGCCgUcGACCg -3'
miRNA:   3'- -GCUCGAgUCGUUUGU---------GCGGgA-CUGGa -5'
13007 3' -55.4 NC_003387.1 + 22653 0.68 0.532586
Target:  5'- uGAGCgCAuGCucGCugGCCCUGAUa- -3'
miRNA:   3'- gCUCGaGU-CGuuUGugCGGGACUGga -5'
13007 3' -55.4 NC_003387.1 + 10373 0.66 0.686916
Target:  5'- uGGGC-C-GCAAGCugGCCCgcaACCUc -3'
miRNA:   3'- gCUCGaGuCGUUUGugCGGGac-UGGA- -5'
13007 3' -55.4 NC_003387.1 + 21352 0.73 0.285531
Target:  5'- aCGAcCUgCAGCcGACGCuGCCCUGGCCg -3'
miRNA:   3'- -GCUcGA-GUCGuUUGUG-CGGGACUGGa -5'
13007 3' -55.4 NC_003387.1 + 47749 0.72 0.323675
Target:  5'- cCGAccuGCUgcGCGAGCACGgCCUGACCg -3'
miRNA:   3'- -GCU---CGAguCGUUUGUGCgGGACUGGa -5'
13007 3' -55.4 NC_003387.1 + 1564 0.71 0.392308
Target:  5'- cCGAGgaCGGCGAAgcgccuaACGCCCUGGCg- -3'
miRNA:   3'- -GCUCgaGUCGUUUg------UGCGGGACUGga -5'
13007 3' -55.4 NC_003387.1 + 21700 0.71 0.401528
Target:  5'- --cGcCUCGGCGAGCGCgGCCCgcgccGACCUg -3'
miRNA:   3'- gcuC-GAGUCGUUUGUG-CGGGa----CUGGA- -5'
13007 3' -55.4 NC_003387.1 + 321 0.7 0.429997
Target:  5'- cCGAGCcCGGCGAcacGCACGCCaaGAUCc -3'
miRNA:   3'- -GCUCGaGUCGUU---UGUGCGGgaCUGGa -5'
13007 3' -55.4 NC_003387.1 + 29709 0.69 0.500724
Target:  5'- aGGcGCUCGGCG---GCGCCCaGGCCg -3'
miRNA:   3'- gCU-CGAGUCGUuugUGCGGGaCUGGa -5'
13007 3' -55.4 NC_003387.1 + 41429 0.7 0.438767
Target:  5'- uCGAGCUacccgaggucacCGGCGcggcccuGACGcCGCCCUGACUg -3'
miRNA:   3'- -GCUCGA------------GUCGU-------UUGU-GCGGGACUGGa -5'
13007 3' -55.4 NC_003387.1 + 7534 0.7 0.420375
Target:  5'- aCGAGagCGGCAcugcuGC-CGCCCUGGCCg -3'
miRNA:   3'- -GCUCgaGUCGUu----UGuGCGGGACUGGa -5'
13007 3' -55.4 NC_003387.1 + 246 0.75 0.208573
Target:  5'- cCGAcauGCUCAGCGuGCAgUGCCCUGGCUg -3'
miRNA:   3'- -GCU---CGAGUCGUuUGU-GCGGGACUGGa -5'
13007 3' -55.4 NC_003387.1 + 48845 0.69 0.468714
Target:  5'- gCGAcGCaCGGCGuGCACGCCCUGgugcgcaGCCg -3'
miRNA:   3'- -GCU-CGaGUCGUuUGUGCGGGAC-------UGGa -5'
13007 3' -55.4 NC_003387.1 + 21808 0.74 0.238213
Target:  5'- -cAGCUCGGCGAGCgACGCCgUGGCg- -3'
miRNA:   3'- gcUCGAGUCGUUUG-UGCGGgACUGga -5'
13007 3' -55.4 NC_003387.1 + 42552 0.71 0.401528
Target:  5'- cCGAGCU-GGCGAgcgagauugGCGCGCaCCUGcACCUg -3'
miRNA:   3'- -GCUCGAgUCGUU---------UGUGCG-GGAC-UGGA- -5'
13007 3' -55.4 NC_003387.1 + 28212 0.69 0.490289
Target:  5'- -cAGCUCGGCAAGCGCaGCCgCgacggcucGACCg -3'
miRNA:   3'- gcUCGAGUCGUUUGUG-CGG-Ga-------CUGGa -5'
13007 3' -55.4 NC_003387.1 + 19324 0.68 0.521878
Target:  5'- cCGAGUaCAGCGAcgaGCGCGgcgagaaCCUGGCCg -3'
miRNA:   3'- -GCUCGaGUCGUU---UGUGCg------GGACUGGa -5'
13007 3' -55.4 NC_003387.1 + 16615 0.74 0.238213
Target:  5'- uCGAcCUCGGCAcGCGCGCCCUGuuCg -3'
miRNA:   3'- -GCUcGAGUCGUuUGUGCGGGACugGa -5'
13007 3' -55.4 NC_003387.1 + 21176 0.72 0.355977
Target:  5'- gGAGCUUuccgaggAGCAGguGCACGCCgugCUGGCCg -3'
miRNA:   3'- gCUCGAG-------UCGUU--UGUGCGG---GACUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.