miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13007 5' -56.5 NC_003387.1 + 52635 1.12 0.000412
Target:  5'- uGCAGGGGAGUCGAGCCAGCAAACGCCc -3'
miRNA:   3'- -CGUCCCCUCAGCUCGGUCGUUUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 13528 0.79 0.10179
Target:  5'- cGCGGGGGccuGGUCGAGCUgcacGCGAAUGUCg -3'
miRNA:   3'- -CGUCCCC---UCAGCUCGGu---CGUUUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 20824 0.77 0.149824
Target:  5'- aGCAGGGGAuacgucgcgcgacGUCGgcgacgggauaGGUCAGCAAgGCGCCg -3'
miRNA:   3'- -CGUCCCCU-------------CAGC-----------UCGGUCGUU-UGCGG- -5'
13007 5' -56.5 NC_003387.1 + 46000 0.76 0.172129
Target:  5'- aGCGGGGcGAGUCGAcggugaacuGCCcGCGgugcaaGACGCCg -3'
miRNA:   3'- -CGUCCC-CUCAGCU---------CGGuCGU------UUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 11263 0.72 0.289951
Target:  5'- gGCGGGGGcAGUCaGGgCGGCGucagggccGCGCCg -3'
miRNA:   3'- -CGUCCCC-UCAGcUCgGUCGUu-------UGCGG- -5'
13007 5' -56.5 NC_003387.1 + 2264 0.72 0.292855
Target:  5'- cGCGGGccGGGGUCGGcucgacgucguccucGCUGGCGuACGCCg -3'
miRNA:   3'- -CGUCC--CCUCAGCU---------------CGGUCGUuUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 38751 0.72 0.312284
Target:  5'- --uGGGcGGGUCGAGCCAGaaauCGUCg -3'
miRNA:   3'- cguCCC-CUCAGCUCGGUCguuuGCGG- -5'
13007 5' -56.5 NC_003387.1 + 21232 0.72 0.327884
Target:  5'- cGCAGGGcGA-UCcGGUCGGCAugguGCGCCg -3'
miRNA:   3'- -CGUCCC-CUcAGcUCGGUCGUu---UGCGG- -5'
13007 5' -56.5 NC_003387.1 + 16087 0.71 0.335898
Target:  5'- uCGGGGGcgccGUCGggcaucgcggcGGCCAGCAgccgcgagucgAACGCCg -3'
miRNA:   3'- cGUCCCCu---CAGC-----------UCGGUCGU-----------UUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 309 0.71 0.352351
Target:  5'- aGCcGGuGGAGccCGAGcCCGGCGAcacgcACGCCa -3'
miRNA:   3'- -CGuCC-CCUCa-GCUC-GGUCGUU-----UGCGG- -5'
13007 5' -56.5 NC_003387.1 + 27846 0.71 0.366778
Target:  5'- aCAGGGcGcagccaccgcccgaGGUCGAGCCAGCcaccACGCa -3'
miRNA:   3'- cGUCCC-C--------------UCAGCUCGGUCGuu--UGCGg -5'
13007 5' -56.5 NC_003387.1 + 15807 0.71 0.369366
Target:  5'- aGCGGGGuGccgcuGUCGccGCCGGUuguGACGCCg -3'
miRNA:   3'- -CGUCCC-Cu----CAGCu-CGGUCGu--UUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 20370 0.7 0.378083
Target:  5'- uGCGGGGGuuguGUCGuuuAGgCGGCGAucaGCCg -3'
miRNA:   3'- -CGUCCCCu---CAGC---UCgGUCGUUug-CGG- -5'
13007 5' -56.5 NC_003387.1 + 30992 0.7 0.378083
Target:  5'- cGCAguuGGGGccgaggucaGGaUCGGGCCgAGCGuGCGCCg -3'
miRNA:   3'- -CGU---CCCC---------UC-AGCUCGG-UCGUuUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 52591 0.7 0.386936
Target:  5'- cGCccGGcGAG-CGAGCuCAGCAAacACGCCc -3'
miRNA:   3'- -CGucCC-CUCaGCUCG-GUCGUU--UGCGG- -5'
13007 5' -56.5 NC_003387.1 + 25298 0.7 0.386936
Target:  5'- cCAGGGcGAcGUCGGcgcggugguGCCAGCGcGCGUCg -3'
miRNA:   3'- cGUCCC-CU-CAGCU---------CGGUCGUuUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 25995 0.7 0.395925
Target:  5'- cGCcGGGGucgCGAuCCAGCucGCGCCg -3'
miRNA:   3'- -CGuCCCCucaGCUcGGUCGuuUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 19841 0.7 0.414301
Target:  5'- gGCAGGuGuugucGUCGAGCUGGCAGucgGCGCa -3'
miRNA:   3'- -CGUCCcCu----CAGCUCGGUCGUU---UGCGg -5'
13007 5' -56.5 NC_003387.1 + 48258 0.69 0.430327
Target:  5'- cGCGGcGGGcucggcGGUCGgcucGGCCuucggcgcgggcucGGCGAACGCCu -3'
miRNA:   3'- -CGUC-CCC------UCAGC----UCGG--------------UCGUUUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 41315 0.69 0.433193
Target:  5'- aGCAccucGGGGccgaUCGcGGCCAGCGuGGCGCCg -3'
miRNA:   3'- -CGU----CCCCuc--AGC-UCGGUCGU-UUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.