miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13007 5' -56.5 NC_003387.1 + 309 0.71 0.352351
Target:  5'- aGCcGGuGGAGccCGAGcCCGGCGAcacgcACGCCa -3'
miRNA:   3'- -CGuCC-CCUCa-GCUC-GGUCGUU-----UGCGG- -5'
13007 5' -56.5 NC_003387.1 + 622 0.69 0.442825
Target:  5'- aGCAGGGcGAGggcagCGucgccGCCgcGGCAgcGACGCCc -3'
miRNA:   3'- -CGUCCC-CUCa----GCu----CGG--UCGU--UUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 1390 0.67 0.588089
Target:  5'- aGCGGGucGGGGUCGcGCUcgaAGUugugcgAGGCGCCg -3'
miRNA:   3'- -CGUCC--CCUCAGCuCGG---UCG------UUUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 2205 0.67 0.603333
Target:  5'- uCAGGGGugccucgugcucgccGGUCaggcGGCCAGCGucaGCCa -3'
miRNA:   3'- cGUCCCC---------------UCAGc---UCGGUCGUuugCGG- -5'
13007 5' -56.5 NC_003387.1 + 2264 0.72 0.292855
Target:  5'- cGCGGGccGGGGUCGGcucgacgucguccucGCUGGCGuACGCCg -3'
miRNA:   3'- -CGUCC--CCUCAGCU---------------CGGUCGUuUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 4133 0.66 0.620813
Target:  5'- aGCGGcGGGcuuuugGGUCG-GCgaGGCGGGCGUCg -3'
miRNA:   3'- -CGUC-CCC------UCAGCuCGg-UCGUUUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 4277 0.69 0.48251
Target:  5'- cGCGGGcgauGGAGgccgCGGGCgAGCA-GCGCa -3'
miRNA:   3'- -CGUCC----CCUCa---GCUCGgUCGUuUGCGg -5'
13007 5' -56.5 NC_003387.1 + 6955 0.66 0.65799
Target:  5'- aGCGGcGGGcAGgCGccacagcgcgcccucGGCCAcuuguGCAGGCGCCg -3'
miRNA:   3'- -CGUC-CCC-UCaGC---------------UCGGU-----CGUUUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 7405 0.67 0.577242
Target:  5'- cGCGGccGGGUCuuGCUGGCAAACGUCc -3'
miRNA:   3'- -CGUCccCUCAGcuCGGUCGUUUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 8997 0.67 0.566441
Target:  5'- cGCGGGcucccgcaugccGccGUCGAGCaccuGGCGGGCGCCg -3'
miRNA:   3'- -CGUCC------------CcuCAGCUCGg---UCGUUUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 9397 0.69 0.486574
Target:  5'- gGCGGGcaagacgaucgccgaGGAGU-GGGCCGacgaguacgacGCGGGCGCCg -3'
miRNA:   3'- -CGUCC---------------CCUCAgCUCGGU-----------CGUUUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 11263 0.72 0.289951
Target:  5'- gGCGGGGGcAGUCaGGgCGGCGucagggccGCGCCg -3'
miRNA:   3'- -CGUCCCC-UCAGcUCgGUCGUu-------UGCGG- -5'
13007 5' -56.5 NC_003387.1 + 12292 0.66 0.653622
Target:  5'- uCAGGccGGGcCGGGCCGGUu--CGCCg -3'
miRNA:   3'- cGUCCc-CUCaGCUCGGUCGuuuGCGG- -5'
13007 5' -56.5 NC_003387.1 + 13528 0.79 0.10179
Target:  5'- cGCGGGGGccuGGUCGAGCUgcacGCGAAUGUCg -3'
miRNA:   3'- -CGUCCCC---UCAGCUCGGu---CGUUUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 13897 0.66 0.653622
Target:  5'- uGCGGcGGcucGUCGAGCCAGCuAACa-- -3'
miRNA:   3'- -CGUC-CCcu-CAGCUCGGUCGuUUGcgg -5'
13007 5' -56.5 NC_003387.1 + 15807 0.71 0.369366
Target:  5'- aGCGGGGuGccgcuGUCGccGCCGGUuguGACGCCg -3'
miRNA:   3'- -CGUCCC-Cu----CAGCu-CGGUCGu--UUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 16061 0.66 0.664533
Target:  5'- cCAGGucGG-CGAGCCGGU-GAUGCCa -3'
miRNA:   3'- cGUCCccUCaGCUCGGUCGuUUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 16087 0.71 0.335898
Target:  5'- uCGGGGGcgccGUCGggcaucgcggcGGCCAGCAgccgcgagucgAACGCCg -3'
miRNA:   3'- cGUCCCCu---CAGC-----------UCGGUCGU-----------UUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 18107 0.67 0.545003
Target:  5'- cGCAGGuaGG-CGGccauGCCGGUGAAUGCCg -3'
miRNA:   3'- -CGUCCccUCaGCU----CGGUCGUUUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 18987 0.68 0.4927
Target:  5'- uGCcGGGGuGcCGcuuagacggGGCCAGCGAGCuaaGCCa -3'
miRNA:   3'- -CGuCCCCuCaGC---------UCGGUCGUUUG---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.