miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13007 5' -56.5 NC_003387.1 + 52635 1.12 0.000412
Target:  5'- uGCAGGGGAGUCGAGCCAGCAAACGCCc -3'
miRNA:   3'- -CGUCCCCUCAGCUCGGUCGUUUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 52591 0.7 0.386936
Target:  5'- cGCccGGcGAG-CGAGCuCAGCAAacACGCCc -3'
miRNA:   3'- -CGucCC-CUCaGCUCG-GUCGUU--UGCGG- -5'
13007 5' -56.5 NC_003387.1 + 51081 0.68 0.513367
Target:  5'- cGUGGcGGccGUCGucguccaucAGCCAGCAcGCGCCg -3'
miRNA:   3'- -CGUC-CCcuCAGC---------UCGGUCGUuUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 49074 0.67 0.577242
Target:  5'- aGCcGGGGca-CGAGCCGGUcGACGgCg -3'
miRNA:   3'- -CGuCCCCucaGCUCGGUCGuUUGCgG- -5'
13007 5' -56.5 NC_003387.1 + 48824 0.68 0.513367
Target:  5'- cCAGGcGGucagGGUCGGG-CAGC-GGCGCCg -3'
miRNA:   3'- cGUCC-CC----UCAGCUCgGUCGuUUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 48258 0.69 0.430327
Target:  5'- cGCGGcGGGcucggcGGUCGgcucGGCCuucggcgcgggcucGGCGAACGCCu -3'
miRNA:   3'- -CGUC-CCC------UCAGC----UCGG--------------UCGUUUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 46626 0.67 0.588089
Target:  5'- cGCAGGuGu-UCGAGCCuGCcgacGACGCCc -3'
miRNA:   3'- -CGUCCcCucAGCUCGGuCGu---UUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 46000 0.76 0.172129
Target:  5'- aGCGGGGcGAGUCGAcggugaacuGCCcGCGgugcaaGACGCCg -3'
miRNA:   3'- -CGUCCC-CUCAGCU---------CGGuCGU------UUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 45678 0.66 0.664533
Target:  5'- uCAGGGcGAGcggcCGGGCCuGCcguuGAACGCg -3'
miRNA:   3'- cGUCCC-CUCa---GCUCGGuCG----UUUGCGg -5'
13007 5' -56.5 NC_003387.1 + 44876 0.67 0.55462
Target:  5'- uCGGGGGcGUCGGcgauuccGCCuGC--GCGCCg -3'
miRNA:   3'- cGUCCCCuCAGCU-------CGGuCGuuUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 41315 0.69 0.433193
Target:  5'- aGCAccucGGGGccgaUCGcGGCCAGCGuGGCGCCg -3'
miRNA:   3'- -CGU----CCCCuc--AGC-UCGGUCGU-UUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 39755 0.66 0.664533
Target:  5'- cGguGGccgcccGGUaCGAGCCGcCAGACGCCg -3'
miRNA:   3'- -CguCCcc----UCA-GCUCGGUcGUUUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 39289 0.68 0.4927
Target:  5'- aGCAGGuu-GcCGAGguaguucacaCCGGCGAGCGCCg -3'
miRNA:   3'- -CGUCCccuCaGCUC----------GGUCGUUUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 39223 0.68 0.4927
Target:  5'- gGCAGuGGGAG-CGGGuaCCGGCGccgggcGAgGCCg -3'
miRNA:   3'- -CGUC-CCCUCaGCUC--GGUCGU------UUgCGG- -5'
13007 5' -56.5 NC_003387.1 + 38751 0.72 0.312284
Target:  5'- --uGGGcGGGUCGAGCCAGaaauCGUCg -3'
miRNA:   3'- cguCCC-CUCAGCUCGGUCguuuGCGG- -5'
13007 5' -56.5 NC_003387.1 + 35325 0.66 0.664533
Target:  5'- gGCAGuGGuGGG-CGGGCgAGgAgauuGACGCCg -3'
miRNA:   3'- -CGUC-CC-CUCaGCUCGgUCgU----UUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 34947 0.66 0.664533
Target:  5'- aCAuGGGGA-UCGuuUCGGCcGACGCCg -3'
miRNA:   3'- cGU-CCCCUcAGCucGGUCGuUUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 31031 0.68 0.522784
Target:  5'- nCGGGGcGG-CG-GCCAGCAcggcaccGGCGCCg -3'
miRNA:   3'- cGUCCCcUCaGCuCGGUCGU-------UUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 30992 0.7 0.378083
Target:  5'- cGCAguuGGGGccgaggucaGGaUCGGGCCgAGCGuGCGCCg -3'
miRNA:   3'- -CGU---CCCC---------UC-AGCUCGG-UCGUuUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 30186 0.66 0.631752
Target:  5'- uCGGGcaaGGAGcagucgcCGAGCCGGU--ACGCCg -3'
miRNA:   3'- cGUCC---CCUCa------GCUCGGUCGuuUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.