miRNA display CGI


Results 21 - 40 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13007 5' -56.5 NC_003387.1 + 19841 0.7 0.414301
Target:  5'- gGCAGGuGuugucGUCGAGCUGGCAGucgGCGCa -3'
miRNA:   3'- -CGUCCcCu----CAGCUCGGUCGUU---UGCGg -5'
13007 5' -56.5 NC_003387.1 + 20370 0.7 0.378083
Target:  5'- uGCGGGGGuuguGUCGuuuAGgCGGCGAucaGCCg -3'
miRNA:   3'- -CGUCCCCu---CAGC---UCgGUCGUUug-CGG- -5'
13007 5' -56.5 NC_003387.1 + 20824 0.77 0.149824
Target:  5'- aGCAGGGGAuacgucgcgcgacGUCGgcgacgggauaGGUCAGCAAgGCGCCg -3'
miRNA:   3'- -CGUCCCCU-------------CAGC-----------UCGGUCGUU-UGCGG- -5'
13007 5' -56.5 NC_003387.1 + 20967 0.69 0.433193
Target:  5'- gGCAGGGG---CGGGCaacgccGCGAAUGCCg -3'
miRNA:   3'- -CGUCCCCucaGCUCGgu----CGUUUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 21232 0.72 0.327884
Target:  5'- cGCAGGGcGA-UCcGGUCGGCAugguGCGCCg -3'
miRNA:   3'- -CGUCCC-CUcAGcUCGGUCGUu---UGCGG- -5'
13007 5' -56.5 NC_003387.1 + 21261 0.66 0.664533
Target:  5'- cGCGacGaGGAGUCGGGCaAGguGGCGCa -3'
miRNA:   3'- -CGU--CcCCUCAGCUCGgUCguUUGCGg -5'
13007 5' -56.5 NC_003387.1 + 21941 0.67 0.598972
Target:  5'- gGCGGcGGGGG-CG-G-CGGCAGGCGUCu -3'
miRNA:   3'- -CGUC-CCCUCaGCuCgGUCGUUUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 23566 0.66 0.609883
Target:  5'- -------cGUCGGGUCGGCGAAUGCCg -3'
miRNA:   3'- cguccccuCAGCUCGGUCGUUUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 25025 0.69 0.48251
Target:  5'- aGCGGccugucGGGGUCG-GCgCAGCAcucGCGCCa -3'
miRNA:   3'- -CGUCc-----CCUCAGCuCG-GUCGUu--UGCGG- -5'
13007 5' -56.5 NC_003387.1 + 25298 0.7 0.386936
Target:  5'- cCAGGGcGAcGUCGGcgcggugguGCCAGCGcGCGUCg -3'
miRNA:   3'- cGUCCC-CU-CAGCU---------CGGUCGUuUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 25995 0.7 0.395925
Target:  5'- cGCcGGGGucgCGAuCCAGCucGCGCCg -3'
miRNA:   3'- -CGuCCCCucaGCUcGGUCGuuUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 26403 0.67 0.555692
Target:  5'- cCAGGGu-GUCGuugaacacAGCCAGCAcGACaGCCa -3'
miRNA:   3'- cGUCCCcuCAGC--------UCGGUCGU-UUG-CGG- -5'
13007 5' -56.5 NC_003387.1 + 26565 0.67 0.598972
Target:  5'- uCGGGGGuugacuccucggGGUCaGGCCGcGCGAGCGgCg -3'
miRNA:   3'- cGUCCCC------------UCAGcUCGGU-CGUUUGCgG- -5'
13007 5' -56.5 NC_003387.1 + 27846 0.71 0.366778
Target:  5'- aCAGGGcGcagccaccgcccgaGGUCGAGCCAGCcaccACGCa -3'
miRNA:   3'- cGUCCC-C--------------UCAGCUCGGUCGuu--UGCGg -5'
13007 5' -56.5 NC_003387.1 + 28090 0.67 0.566441
Target:  5'- aGCAGGGcGAggugcGUCGGGUCGccCAGGCGCg -3'
miRNA:   3'- -CGUCCC-CU-----CAGCUCGGUc-GUUUGCGg -5'
13007 5' -56.5 NC_003387.1 + 30186 0.66 0.631752
Target:  5'- uCGGGcaaGGAGcagucgcCGAGCCGGU--ACGCCg -3'
miRNA:   3'- cGUCC---CCUCa------GCUCGGUCGuuUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 30992 0.7 0.378083
Target:  5'- cGCAguuGGGGccgaggucaGGaUCGGGCCgAGCGuGCGCCg -3'
miRNA:   3'- -CGU---CCCC---------UC-AGCUCGG-UCGUuUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 31031 0.68 0.522784
Target:  5'- nCGGGGcGG-CG-GCCAGCAcggcaccGGCGCCg -3'
miRNA:   3'- cGUCCCcUCaGCuCGGUCGU-------UUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 34947 0.66 0.664533
Target:  5'- aCAuGGGGA-UCGuuUCGGCcGACGCCg -3'
miRNA:   3'- cGU-CCCCUcAGCucGGUCGuUUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 35325 0.66 0.664533
Target:  5'- gGCAGuGGuGGG-CGGGCgAGgAgauuGACGCCg -3'
miRNA:   3'- -CGUC-CC-CUCaGCUCGgUCgU----UUGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.