miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13007 5' -56.5 NC_003387.1 + 15807 0.71 0.369366
Target:  5'- aGCGGGGuGccgcuGUCGccGCCGGUuguGACGCCg -3'
miRNA:   3'- -CGUCCC-Cu----CAGCu-CGGUCGu--UUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 27846 0.71 0.366778
Target:  5'- aCAGGGcGcagccaccgcccgaGGUCGAGCCAGCcaccACGCa -3'
miRNA:   3'- cGUCCC-C--------------UCAGCUCGGUCGuu--UGCGg -5'
13007 5' -56.5 NC_003387.1 + 16087 0.71 0.335898
Target:  5'- uCGGGGGcgccGUCGggcaucgcggcGGCCAGCAgccgcgagucgAACGCCg -3'
miRNA:   3'- cGUCCCCu---CAGC-----------UCGGUCGU-----------UUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 4133 0.66 0.620813
Target:  5'- aGCGGcGGGcuuuugGGUCG-GCgaGGCGGGCGUCg -3'
miRNA:   3'- -CGUC-CCC------UCAGCuCGg-UCGUUUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 25298 0.7 0.386936
Target:  5'- cCAGGGcGAcGUCGGcgcggugguGCCAGCGcGCGUCg -3'
miRNA:   3'- cGUCCC-CU-CAGCU---------CGGUCGUuUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 25995 0.7 0.395925
Target:  5'- cGCcGGGGucgCGAuCCAGCucGCGCCg -3'
miRNA:   3'- -CGuCCCCucaGCUcGGUCGuuUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 19841 0.7 0.414301
Target:  5'- gGCAGGuGuugucGUCGAGCUGGCAGucgGCGCa -3'
miRNA:   3'- -CGUCCcCu----CAGCUCGGUCGUU---UGCGg -5'
13007 5' -56.5 NC_003387.1 + 12292 0.66 0.653622
Target:  5'- uCAGGccGGGcCGGGCCGGUu--CGCCg -3'
miRNA:   3'- cGUCCc-CUCaGCUCGGUCGuuuGCGG- -5'
13007 5' -56.5 NC_003387.1 + 23566 0.66 0.609883
Target:  5'- -------cGUCGGGUCGGCGAAUGCCg -3'
miRNA:   3'- cguccccuCAGCUCGGUCGUUUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 1390 0.67 0.588089
Target:  5'- aGCGGGucGGGGUCGcGCUcgaAGUugugcgAGGCGCCg -3'
miRNA:   3'- -CGUCC--CCUCAGCuCGG---UCG------UUUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 7405 0.67 0.577242
Target:  5'- cGCGGccGGGUCuuGCUGGCAAACGUCc -3'
miRNA:   3'- -CGUCccCUCAGcuCGGUCGUUUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 49074 0.67 0.577242
Target:  5'- aGCcGGGGca-CGAGCCGGUcGACGgCg -3'
miRNA:   3'- -CGuCCCCucaGCUCGGUCGuUUGCgG- -5'
13007 5' -56.5 NC_003387.1 + 8997 0.67 0.566441
Target:  5'- cGCGGGcucccgcaugccGccGUCGAGCaccuGGCGGGCGCCg -3'
miRNA:   3'- -CGUCC------------CcuCAGCUCGg---UCGUUUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 28090 0.67 0.566441
Target:  5'- aGCAGGGcGAggugcGUCGGGUCGccCAGGCGCg -3'
miRNA:   3'- -CGUCCC-CU-----CAGCUCGGUc-GUUUGCGg -5'
13007 5' -56.5 NC_003387.1 + 26403 0.67 0.555692
Target:  5'- cCAGGGu-GUCGuugaacacAGCCAGCAcGACaGCCa -3'
miRNA:   3'- cGUCCCcuCAGC--------UCGGUCGU-UUG-CGG- -5'
13007 5' -56.5 NC_003387.1 + 39289 0.68 0.4927
Target:  5'- aGCAGGuu-GcCGAGguaguucacaCCGGCGAGCGCCg -3'
miRNA:   3'- -CGUCCccuCaGCUC----------GGUCGUUUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 18987 0.68 0.4927
Target:  5'- uGCcGGGGuGcCGcuuagacggGGCCAGCGAGCuaaGCCa -3'
miRNA:   3'- -CGuCCCCuCaGC---------UCGGUCGUUUG---CGG- -5'
13007 5' -56.5 NC_003387.1 + 25025 0.69 0.48251
Target:  5'- aGCGGccugucGGGGUCG-GCgCAGCAcucGCGCCa -3'
miRNA:   3'- -CGUCc-----CCUCAGCuCG-GUCGUu--UGCGG- -5'
13007 5' -56.5 NC_003387.1 + 41315 0.69 0.433193
Target:  5'- aGCAccucGGGGccgaUCGcGGCCAGCGuGGCGCCg -3'
miRNA:   3'- -CGU----CCCCuc--AGC-UCGGUCGU-UUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 48258 0.69 0.430327
Target:  5'- cGCGGcGGGcucggcGGUCGgcucGGCCuucggcgcgggcucGGCGAACGCCu -3'
miRNA:   3'- -CGUC-CCC------UCAGC----UCGG--------------UCGUUUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.