miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13025 5' -55 NC_003390.1 + 15304 0.71 0.382087
Target:  5'- gGGCCAAGAaauaCGUGGaaagaucaugCAAGGCCu -3'
miRNA:   3'- aCCGGUUCUgug-GCAUCga--------GUUCCGG- -5'
13025 5' -55 NC_003390.1 + 43687 0.66 0.688209
Target:  5'- aGGCCucc-CACCGgGGCcugUggGGCCu -3'
miRNA:   3'- aCCGGuucuGUGGCaUCGa--GuuCCGG- -5'
13025 5' -55 NC_003390.1 + 2724 0.67 0.63236
Target:  5'- gGGCCGGGGCggcuaccucACCGaGGagaUCAGGGgCa -3'
miRNA:   3'- aCCGGUUCUG---------UGGCaUCg--AGUUCCgG- -5'
13025 5' -55 NC_003390.1 + 19911 0.67 0.631238
Target:  5'- aUGGCUAAG-CACUuugauGCUCAgcauguggagcauGGGCCa -3'
miRNA:   3'- -ACCGGUUCuGUGGcau--CGAGU-------------UCCGG- -5'
13025 5' -55 NC_003390.1 + 29476 0.67 0.614421
Target:  5'- gGGCCAcaGGGgGCCGUgggggauccggagcgGGCgCGGGaGCCg -3'
miRNA:   3'- aCCGGU--UCUgUGGCA---------------UCGaGUUC-CGG- -5'
13025 5' -55 NC_003390.1 + 31855 0.67 0.609942
Target:  5'- gGGUgGAGuugGCCGuUGGUgUCGAGGCCa -3'
miRNA:   3'- aCCGgUUCug-UGGC-AUCG-AGUUCCGG- -5'
13025 5' -55 NC_003390.1 + 1873 0.68 0.576488
Target:  5'- cGGCUAuccAGaACACCaGUGGagggUCGAGGCUg -3'
miRNA:   3'- aCCGGU---UC-UGUGG-CAUCg---AGUUCCGG- -5'
13025 5' -55 NC_003390.1 + 30918 0.68 0.543459
Target:  5'- cGGCCAuaGCcugcagcaGCCgGUGGCUgAGGGCUg -3'
miRNA:   3'- aCCGGUucUG--------UGG-CAUCGAgUUCCGG- -5'
13025 5' -55 NC_003390.1 + 3568 0.68 0.521786
Target:  5'- aUGGCCccucAGACgguuacaagACgGUGGCU-GAGGCCg -3'
miRNA:   3'- -ACCGGu---UCUG---------UGgCAUCGAgUUCCGG- -5'
13025 5' -55 NC_003390.1 + 32350 0.67 0.621146
Target:  5'- gGGCacGGugACCGauggAGCUCuGGGCg -3'
miRNA:   3'- aCCGguUCugUGGCa---UCGAGuUCCGg -5'
13025 5' -55 NC_003390.1 + 18712 0.67 0.609942
Target:  5'- uUGGCCAuccgcAGAgCAUCcc-GCUCGGGGUCg -3'
miRNA:   3'- -ACCGGU-----UCU-GUGGcauCGAGUUCCGG- -5'
13025 5' -55 NC_003390.1 + 6938 0.67 0.598758
Target:  5'- cGGCUAacaGGGC-CCGU-GCaggCAAGGCUa -3'
miRNA:   3'- aCCGGU---UCUGuGGCAuCGa--GUUCCGG- -5'
13025 5' -55 NC_003390.1 + 7501 0.68 0.576488
Target:  5'- uUGGCCccaGAGAuCACCGgAGUcgucUCAGGaGCCc -3'
miRNA:   3'- -ACCGG---UUCU-GUGGCaUCG----AGUUC-CGG- -5'
13025 5' -55 NC_003390.1 + 9161 0.68 0.554407
Target:  5'- gGuGCCcuGGACAauGcAGUUCAAGGCCa -3'
miRNA:   3'- aC-CGGu-UCUGUggCaUCGAGUUCCGG- -5'
13025 5' -55 NC_003390.1 + 23197 0.7 0.40993
Target:  5'- aUGGCCAccucAGACACCaagccgGUgaAGCUaGAGGCUg -3'
miRNA:   3'- -ACCGGU----UCUGUGG------CA--UCGAgUUCCGG- -5'
13025 5' -55 NC_003390.1 + 37984 0.72 0.359868
Target:  5'- aGGaCCAaagggugacaagggAGACACUGgcgacccagguGCUCAAGGCCc -3'
miRNA:   3'- aCC-GGU--------------UCUGUGGCau---------CGAGUUCCGG- -5'
13025 5' -55 NC_003390.1 + 7016 0.74 0.262674
Target:  5'- aUGGCUAAGAcCGCCGcugagGGCUCuguacuGGGCUu -3'
miRNA:   3'- -ACCGGUUCU-GUGGCa----UCGAGu-----UCCGG- -5'
13025 5' -55 NC_003390.1 + 32013 0.75 0.230213
Target:  5'- cUGGCCcuuGCGCuuuCGUAGCUCAGgGGCCa -3'
miRNA:   3'- -ACCGGuucUGUG---GCAUCGAGUU-CCGG- -5'
13025 5' -55 NC_003390.1 + 27792 0.79 0.114936
Target:  5'- cUGGCUAAGACGCCuaUGGCUgAgcAGGCCa -3'
miRNA:   3'- -ACCGGUUCUGUGGc-AUCGAgU--UCCGG- -5'
13025 5' -55 NC_003390.1 + 31507 0.65 0.699258
Target:  5'- cGGCCucgaggagcAGGACGaaGagcAGCUCAuGGCCu -3'
miRNA:   3'- aCCGG---------UUCUGUggCa--UCGAGUuCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.