Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13025 | 5' | -55 | NC_003390.1 | + | 1403 | 0.66 | 0.665957 |
Target: 5'- gGGCCGuuuccaucaagGGAUGCuuCGUAGCauuGGGCCa -3' miRNA: 3'- aCCGGU-----------UCUGUG--GCAUCGaguUCCGG- -5' |
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13025 | 5' | -55 | NC_003390.1 | + | 1481 | 0.67 | 0.63236 |
Target: 5'- gUGGUCGAGcAgACCuucgAGCUCAucaaaggucAGGCCc -3' miRNA: 3'- -ACCGGUUC-UgUGGca--UCGAGU---------UCCGG- -5' |
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13025 | 5' | -55 | NC_003390.1 | + | 1873 | 0.68 | 0.576488 |
Target: 5'- cGGCUAuccAGaACACCaGUGGagggUCGAGGCUg -3' miRNA: 3'- aCCGGU---UC-UGUGG-CAUCg---AGUUCCGG- -5' |
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13025 | 5' | -55 | NC_003390.1 | + | 2724 | 0.67 | 0.63236 |
Target: 5'- gGGCCGGGGCggcuaccucACCGaGGagaUCAGGGgCa -3' miRNA: 3'- aCCGGUUCUG---------UGGCaUCg--AGUUCCgG- -5' |
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13025 | 5' | -55 | NC_003390.1 | + | 3568 | 0.68 | 0.521786 |
Target: 5'- aUGGCCccucAGACgguuacaagACgGUGGCU-GAGGCCg -3' miRNA: 3'- -ACCGGu---UCUG---------UGgCAUCGAgUUCCGG- -5' |
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13025 | 5' | -55 | NC_003390.1 | + | 6938 | 0.67 | 0.598758 |
Target: 5'- cGGCUAacaGGGC-CCGU-GCaggCAAGGCUa -3' miRNA: 3'- aCCGGU---UCUGuGGCAuCGa--GUUCCGG- -5' |
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13025 | 5' | -55 | NC_003390.1 | + | 7016 | 0.74 | 0.262674 |
Target: 5'- aUGGCUAAGAcCGCCGcugagGGCUCuguacuGGGCUu -3' miRNA: 3'- -ACCGGUUCU-GUGGCa----UCGAGu-----UCCGG- -5' |
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13025 | 5' | -55 | NC_003390.1 | + | 7501 | 0.68 | 0.576488 |
Target: 5'- uUGGCCccaGAGAuCACCGgAGUcgucUCAGGaGCCc -3' miRNA: 3'- -ACCGG---UUCU-GUGGCaUCG----AGUUC-CGG- -5' |
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13025 | 5' | -55 | NC_003390.1 | + | 7735 | 0.66 | 0.673765 |
Target: 5'- gUGGCCcuguagaagagaagAAGGgACCcggAGCUCucGGGCCc -3' miRNA: 3'- -ACCGG--------------UUCUgUGGca-UCGAGu-UCCGG- -5' |
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13025 | 5' | -55 | NC_003390.1 | + | 9161 | 0.68 | 0.554407 |
Target: 5'- gGuGCCcuGGACAauGcAGUUCAAGGCCa -3' miRNA: 3'- aC-CGGu-UCUGUggCaUCGAGUUCCGG- -5' |
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13025 | 5' | -55 | NC_003390.1 | + | 10797 | 0.67 | 0.621146 |
Target: 5'- -aGCCAAG-CGCCGUcggGGC-CAGGGgCu -3' miRNA: 3'- acCGGUUCuGUGGCA---UCGaGUUCCgG- -5' |
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13025 | 5' | -55 | NC_003390.1 | + | 15159 | 1.13 | 0.000434 |
Target: 5'- gUGGCCAAGACACCGUAGCUCAAGGCCa -3' miRNA: 3'- -ACCGGUUCUGUGGCAUCGAGUUCCGG- -5' |
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13025 | 5' | -55 | NC_003390.1 | + | 15304 | 0.71 | 0.382087 |
Target: 5'- gGGCCAAGAaauaCGUGGaaagaucaugCAAGGCCu -3' miRNA: 3'- aCCGGUUCUgug-GCAUCga--------GUUCCGG- -5' |
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13025 | 5' | -55 | NC_003390.1 | + | 15637 | 0.67 | 0.63236 |
Target: 5'- cGGCUcuaacAGACAgCUGUuGCUCAucgugcacaaAGGCCa -3' miRNA: 3'- aCCGGu----UCUGU-GGCAuCGAGU----------UCCGG- -5' |
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13025 | 5' | -55 | NC_003390.1 | + | 18712 | 0.67 | 0.609942 |
Target: 5'- uUGGCCAuccgcAGAgCAUCcc-GCUCGGGGUCg -3' miRNA: 3'- -ACCGGU-----UCU-GUGGcauCGAGUUCCGG- -5' |
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13025 | 5' | -55 | NC_003390.1 | + | 19911 | 0.67 | 0.631238 |
Target: 5'- aUGGCUAAG-CACUuugauGCUCAgcauguggagcauGGGCCa -3' miRNA: 3'- -ACCGGUUCuGUGGcau--CGAGU-------------UCCGG- -5' |
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13025 | 5' | -55 | NC_003390.1 | + | 23197 | 0.7 | 0.40993 |
Target: 5'- aUGGCCAccucAGACACCaagccgGUgaAGCUaGAGGCUg -3' miRNA: 3'- -ACCGGU----UCUGUGG------CA--UCGAgUUCCGG- -5' |
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13025 | 5' | -55 | NC_003390.1 | + | 27792 | 0.79 | 0.114936 |
Target: 5'- cUGGCUAAGACGCCuaUGGCUgAgcAGGCCa -3' miRNA: 3'- -ACCGGUUCUGUGGc-AUCGAgU--UCCGG- -5' |
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13025 | 5' | -55 | NC_003390.1 | + | 29476 | 0.67 | 0.614421 |
Target: 5'- gGGCCAcaGGGgGCCGUgggggauccggagcgGGCgCGGGaGCCg -3' miRNA: 3'- aCCGGU--UCUgUGGCA---------------UCGaGUUC-CGG- -5' |
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13025 | 5' | -55 | NC_003390.1 | + | 29880 | 0.67 | 0.631238 |
Target: 5'- aUGGCUAAG-CACUuugauGCUCAgcauguggagcauGGGCCa -3' miRNA: 3'- -ACCGGUUCuGUGGcau--CGAGU-------------UCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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