Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13025 | 5' | -55 | NC_003390.1 | + | 43687 | 0.66 | 0.688209 |
Target: 5'- aGGCCucc-CACCGgGGCcugUggGGCCu -3' miRNA: 3'- aCCGGuucuGUGGCaUCGa--GuuCCGG- -5' |
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13025 | 5' | -55 | NC_003390.1 | + | 41413 | 0.66 | 0.643573 |
Target: 5'- aGGCCAgcAGAUauAUCG-AGCUCGauGGuGCCa -3' miRNA: 3'- aCCGGU--UCUG--UGGCaUCGAGU--UC-CGG- -5' |
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13025 | 5' | -55 | NC_003390.1 | + | 39765 | 0.66 | 0.66484 |
Target: 5'- aGGuCCAAGAagaauucCACUGUaucucccaagAGCUaCAGGGCUa -3' miRNA: 3'- aCC-GGUUCU-------GUGGCA----------UCGA-GUUCCGG- -5' |
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13025 | 5' | -55 | NC_003390.1 | + | 37984 | 0.72 | 0.359868 |
Target: 5'- aGGaCCAaagggugacaagggAGACACUGgcgacccagguGCUCAAGGCCc -3' miRNA: 3'- aCC-GGU--------------UCUGUGGCau---------CGAGUUCCGG- -5' |
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13025 | 5' | -55 | NC_003390.1 | + | 34088 | 0.66 | 0.654776 |
Target: 5'- aGGCCucugagcGGGCGCUagcaggGGCUCuaagGGGCCu -3' miRNA: 3'- aCCGGu------UCUGUGGca----UCGAGu---UCCGG- -5' |
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13025 | 5' | -55 | NC_003390.1 | + | 32350 | 0.67 | 0.621146 |
Target: 5'- gGGCacGGugACCGauggAGCUCuGGGCg -3' miRNA: 3'- aCCGguUCugUGGCa---UCGAGuUCCGg -5' |
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13025 | 5' | -55 | NC_003390.1 | + | 32013 | 0.75 | 0.230213 |
Target: 5'- cUGGCCcuuGCGCuuuCGUAGCUCAGgGGCCa -3' miRNA: 3'- -ACCGGuucUGUG---GCAUCGAGUU-CCGG- -5' |
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13025 | 5' | -55 | NC_003390.1 | + | 31855 | 0.67 | 0.609942 |
Target: 5'- gGGUgGAGuugGCCGuUGGUgUCGAGGCCa -3' miRNA: 3'- aCCGgUUCug-UGGC-AUCG-AGUUCCGG- -5' |
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13025 | 5' | -55 | NC_003390.1 | + | 31507 | 0.65 | 0.699258 |
Target: 5'- cGGCCucgaggagcAGGACGaaGagcAGCUCAuGGCCu -3' miRNA: 3'- aCCGG---------UUCUGUggCa--UCGAGUuCCGG- -5' |
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13025 | 5' | -55 | NC_003390.1 | + | 30918 | 0.68 | 0.543459 |
Target: 5'- cGGCCAuaGCcugcagcaGCCgGUGGCUgAGGGCUg -3' miRNA: 3'- aCCGGUucUG--------UGG-CAUCGAgUUCCGG- -5' |
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13025 | 5' | -55 | NC_003390.1 | + | 29880 | 0.67 | 0.631238 |
Target: 5'- aUGGCUAAG-CACUuugauGCUCAgcauguggagcauGGGCCa -3' miRNA: 3'- -ACCGGUUCuGUGGcau--CGAGU-------------UCCGG- -5' |
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13025 | 5' | -55 | NC_003390.1 | + | 29476 | 0.67 | 0.614421 |
Target: 5'- gGGCCAcaGGGgGCCGUgggggauccggagcgGGCgCGGGaGCCg -3' miRNA: 3'- aCCGGU--UCUgUGGCA---------------UCGaGUUC-CGG- -5' |
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13025 | 5' | -55 | NC_003390.1 | + | 27792 | 0.79 | 0.114936 |
Target: 5'- cUGGCUAAGACGCCuaUGGCUgAgcAGGCCa -3' miRNA: 3'- -ACCGGUUCUGUGGc-AUCGAgU--UCCGG- -5' |
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13025 | 5' | -55 | NC_003390.1 | + | 23197 | 0.7 | 0.40993 |
Target: 5'- aUGGCCAccucAGACACCaagccgGUgaAGCUaGAGGCUg -3' miRNA: 3'- -ACCGGU----UCUGUGG------CA--UCGAgUUCCGG- -5' |
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13025 | 5' | -55 | NC_003390.1 | + | 19911 | 0.67 | 0.631238 |
Target: 5'- aUGGCUAAG-CACUuugauGCUCAgcauguggagcauGGGCCa -3' miRNA: 3'- -ACCGGUUCuGUGGcau--CGAGU-------------UCCGG- -5' |
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13025 | 5' | -55 | NC_003390.1 | + | 18712 | 0.67 | 0.609942 |
Target: 5'- uUGGCCAuccgcAGAgCAUCcc-GCUCGGGGUCg -3' miRNA: 3'- -ACCGGU-----UCU-GUGGcauCGAGUUCCGG- -5' |
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13025 | 5' | -55 | NC_003390.1 | + | 15637 | 0.67 | 0.63236 |
Target: 5'- cGGCUcuaacAGACAgCUGUuGCUCAucgugcacaaAGGCCa -3' miRNA: 3'- aCCGGu----UCUGU-GGCAuCGAGU----------UCCGG- -5' |
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13025 | 5' | -55 | NC_003390.1 | + | 15304 | 0.71 | 0.382087 |
Target: 5'- gGGCCAAGAaauaCGUGGaaagaucaugCAAGGCCu -3' miRNA: 3'- aCCGGUUCUgug-GCAUCga--------GUUCCGG- -5' |
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13025 | 5' | -55 | NC_003390.1 | + | 15159 | 1.13 | 0.000434 |
Target: 5'- gUGGCCAAGACACCGUAGCUCAAGGCCa -3' miRNA: 3'- -ACCGGUUCUGUGGCAUCGAGUUCCGG- -5' |
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13025 | 5' | -55 | NC_003390.1 | + | 10797 | 0.67 | 0.621146 |
Target: 5'- -aGCCAAG-CGCCGUcggGGC-CAGGGgCu -3' miRNA: 3'- acCGGUUCuGUGGCA---UCGaGUUCCgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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