miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13092 3' -58.8 NC_003401.1 + 23240 0.66 0.736314
Target:  5'- cUAGGCCAGgGGGUuguugcccuguuuucGGGCAGGCg---- -3'
miRNA:   3'- -GUCCGGUCgCUCG---------------UUCGUCCGgauga -5'
13092 3' -58.8 NC_003401.1 + 11822 0.66 0.722397
Target:  5'- aAGGUCAGaCGGuaccGCAAGguGGCCa--- -3'
miRNA:   3'- gUCCGGUC-GCU----CGUUCguCCGGauga -5'
13092 3' -58.8 NC_003401.1 + 75088 0.66 0.71236
Target:  5'- uGGGCgCuuGGCGGGCAGGCAGaGUUUAa- -3'
miRNA:   3'- gUCCG-G--UCGCUCGUUCGUC-CGGAUga -5'
13092 3' -58.8 NC_003401.1 + 98287 0.66 0.71236
Target:  5'- aUAGGCCacAGCucGCGAGCcuGGCCUuaACg -3'
miRNA:   3'- -GUCCGG--UCGcuCGUUCGu-CCGGA--UGa -5'
13092 3' -58.8 NC_003401.1 + 122535 0.66 0.71236
Target:  5'- --cGCCGGCGAcaagGUAAGgGGGCCgcgGCg -3'
miRNA:   3'- gucCGGUCGCU----CGUUCgUCCGGa--UGa -5'
13092 3' -58.8 NC_003401.1 + 104550 0.66 0.702254
Target:  5'- aUAGGCacaaaacuCAGCGAGCuu-CAGGCgUACa -3'
miRNA:   3'- -GUCCG--------GUCGCUCGuucGUCCGgAUGa -5'
13092 3' -58.8 NC_003401.1 + 56785 0.66 0.698194
Target:  5'- aGGGUCAGCGAGCcgaauaugguaauAGUGGG-CUGCg -3'
miRNA:   3'- gUCCGGUCGCUCGu------------UCGUCCgGAUGa -5'
13092 3' -58.8 NC_003401.1 + 41364 0.67 0.670582
Target:  5'- gCGGGCCA-CGAGguGguggggcGCAGGCCcGCg -3'
miRNA:   3'- -GUCCGGUcGCUCguU-------CGUCCGGaUGa -5'
13092 3' -58.8 NC_003401.1 + 66843 0.67 0.661317
Target:  5'- aCGGGCCugucAGCaAGCcuGCAGGCCa--- -3'
miRNA:   3'- -GUCCGG----UCGcUCGuuCGUCCGGauga -5'
13092 3' -58.8 NC_003401.1 + 132490 0.67 0.651001
Target:  5'- cCGGGCCGGCGGGgcGGaGGGCCg--- -3'
miRNA:   3'- -GUCCGGUCGCUCguUCgUCCGGauga -5'
13092 3' -58.8 NC_003401.1 + 94058 0.68 0.578816
Target:  5'- gCAGGCCAcGCGGGCGAGUuauauucgAGaCUUGCUc -3'
miRNA:   3'- -GUCCGGU-CGCUCGUUCG--------UCcGGAUGA- -5'
13092 3' -58.8 NC_003401.1 + 57735 0.69 0.558432
Target:  5'- uGGGCC-GCG-GCGAGCGGGUaUACc -3'
miRNA:   3'- gUCCGGuCGCuCGUUCGUCCGgAUGa -5'
13092 3' -58.8 NC_003401.1 + 23622 0.69 0.54529
Target:  5'- gCAGGCCAaaaacacgggcgccGCGAGCGgccGGCAGGUg-GCg -3'
miRNA:   3'- -GUCCGGU--------------CGCUCGU---UCGUCCGgaUGa -5'
13092 3' -58.8 NC_003401.1 + 133314 0.69 0.538255
Target:  5'- gCAGGCguaccguccccuUAGCaAGCAAGCAGcCCUACUg -3'
miRNA:   3'- -GUCCG------------GUCGcUCGUUCGUCcGGAUGA- -5'
13092 3' -58.8 NC_003401.1 + 599 0.69 0.538255
Target:  5'- gCAGGCguaccguccccuUAGCaAGCAAGCAGcCCUACUg -3'
miRNA:   3'- -GUCCG------------GUCGcUCGUUCGUCcGGAUGA- -5'
13092 3' -58.8 NC_003401.1 + 59645 0.7 0.498713
Target:  5'- aGGGgCAGCGAaCGAGCAucGCCUACUc -3'
miRNA:   3'- gUCCgGUCGCUcGUUCGUc-CGGAUGA- -5'
13092 3' -58.8 NC_003401.1 + 109 0.7 0.469925
Target:  5'- gUAGGCCuGCuuGCucGCuGGCCUGCUu -3'
miRNA:   3'- -GUCCGGuCGcuCGuuCGuCCGGAUGA- -5'
13092 3' -58.8 NC_003401.1 + 132908 0.7 0.469925
Target:  5'- gUAGGCCuGCuuGCucGCuGGCCUGCUu -3'
miRNA:   3'- -GUCCGGuCGcuCGuuCGuCCGGAUGA- -5'
13092 3' -58.8 NC_003401.1 + 132844 0.7 0.469925
Target:  5'- gUAGGCCuGCuuGCucGCuGGCCUGCUu -3'
miRNA:   3'- -GUCCGGuCGcuCGuuCGuCCGGAUGA- -5'
13092 3' -58.8 NC_003401.1 + 173 0.7 0.469925
Target:  5'- gUAGGCCuGCuuGCucGCuGGCCUGCUu -3'
miRNA:   3'- -GUCCGGuCGcuCGuuCGuCCGGAUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.