Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13092 | 3' | -58.8 | NC_003401.1 | + | 109 | 0.7 | 0.469925 |
Target: 5'- gUAGGCCuGCuuGCucGCuGGCCUGCUu -3' miRNA: 3'- -GUCCGGuCGcuCGuuCGuCCGGAUGA- -5' |
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13092 | 3' | -58.8 | NC_003401.1 | + | 173 | 0.7 | 0.469925 |
Target: 5'- gUAGGCCuGCuuGCucGCuGGCCUGCUu -3' miRNA: 3'- -GUCCGGuCGcuCGuuCGuCCGGAUGA- -5' |
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13092 | 3' | -58.8 | NC_003401.1 | + | 227 | 0.9 | 0.024068 |
Target: 5'- gCAGGCCAGCGAGCAGGCAGGCa---- -3' miRNA: 3'- -GUCCGGUCGCUCGUUCGUCCGgauga -5' |
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13092 | 3' | -58.8 | NC_003401.1 | + | 267 | 1.07 | 0.001347 |
Target: 5'- gCAGGCCAGCGAGCAAGCAGGCCUACUg -3' miRNA: 3'- -GUCCGGUCGCUCGUUCGUCCGGAUGA- -5' |
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13092 | 3' | -58.8 | NC_003401.1 | + | 331 | 1.07 | 0.001347 |
Target: 5'- gCAGGCCAGCGAGCAAGCAGGCCUACUg -3' miRNA: 3'- -GUCCGGUCGCUCGUUCGUCCGGAUGA- -5' |
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13092 | 3' | -58.8 | NC_003401.1 | + | 387 | 0.78 | 0.155831 |
Target: 5'- gCAGGCCAGCGAGCAgcccuacuAGCAaGCCaGCa -3' miRNA: 3'- -GUCCGGUCGCUCGU--------UCGUcCGGaUGa -5' |
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13092 | 3' | -58.8 | NC_003401.1 | + | 427 | 0.91 | 0.019812 |
Target: 5'- gCAGGCCAGCGAGCAagcaAGCAGGCCaGCg -3' miRNA: 3'- -GUCCGGUCGCUCGU----UCGUCCGGaUGa -5' |
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13092 | 3' | -58.8 | NC_003401.1 | + | 467 | 0.91 | 0.019812 |
Target: 5'- gCAGGCCAGCGAGCAagcaAGCAGGCCaGCg -3' miRNA: 3'- -GUCCGGUCGCUCGU----UCGUCCGGaUGa -5' |
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13092 | 3' | -58.8 | NC_003401.1 | + | 507 | 0.91 | 0.019812 |
Target: 5'- gCAGGCCAGCGAGCAagcaAGCAGGCCaGCg -3' miRNA: 3'- -GUCCGGUCGCUCGU----UCGUCCGGaUGa -5' |
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13092 | 3' | -58.8 | NC_003401.1 | + | 547 | 0.91 | 0.019812 |
Target: 5'- gCAGGCCAGCGAGCAagcaAGCAGGCCaGCg -3' miRNA: 3'- -GUCCGGUCGCUCGU----UCGUCCGGaUGa -5' |
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13092 | 3' | -58.8 | NC_003401.1 | + | 599 | 0.69 | 0.538255 |
Target: 5'- gCAGGCguaccguccccuUAGCaAGCAAGCAGcCCUACUg -3' miRNA: 3'- -GUCCG------------GUCGcUCGUUCGUCcGGAUGA- -5' |
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13092 | 3' | -58.8 | NC_003401.1 | + | 11822 | 0.66 | 0.722397 |
Target: 5'- aAGGUCAGaCGGuaccGCAAGguGGCCa--- -3' miRNA: 3'- gUCCGGUC-GCU----CGUUCguCCGGauga -5' |
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13092 | 3' | -58.8 | NC_003401.1 | + | 23240 | 0.66 | 0.736314 |
Target: 5'- cUAGGCCAGgGGGUuguugcccuguuuucGGGCAGGCg---- -3' miRNA: 3'- -GUCCGGUCgCUCG---------------UUCGUCCGgauga -5' |
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13092 | 3' | -58.8 | NC_003401.1 | + | 23622 | 0.69 | 0.54529 |
Target: 5'- gCAGGCCAaaaacacgggcgccGCGAGCGgccGGCAGGUg-GCg -3' miRNA: 3'- -GUCCGGU--------------CGCUCGU---UCGUCCGgaUGa -5' |
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13092 | 3' | -58.8 | NC_003401.1 | + | 41364 | 0.67 | 0.670582 |
Target: 5'- gCGGGCCA-CGAGguGguggggcGCAGGCCcGCg -3' miRNA: 3'- -GUCCGGUcGCUCguU-------CGUCCGGaUGa -5' |
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13092 | 3' | -58.8 | NC_003401.1 | + | 56785 | 0.66 | 0.698194 |
Target: 5'- aGGGUCAGCGAGCcgaauaugguaauAGUGGG-CUGCg -3' miRNA: 3'- gUCCGGUCGCUCGu------------UCGUCCgGAUGa -5' |
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13092 | 3' | -58.8 | NC_003401.1 | + | 57735 | 0.69 | 0.558432 |
Target: 5'- uGGGCC-GCG-GCGAGCGGGUaUACc -3' miRNA: 3'- gUCCGGuCGCuCGUUCGUCCGgAUGa -5' |
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13092 | 3' | -58.8 | NC_003401.1 | + | 59645 | 0.7 | 0.498713 |
Target: 5'- aGGGgCAGCGAaCGAGCAucGCCUACUc -3' miRNA: 3'- gUCCgGUCGCUcGUUCGUc-CGGAUGA- -5' |
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13092 | 3' | -58.8 | NC_003401.1 | + | 66843 | 0.67 | 0.661317 |
Target: 5'- aCGGGCCugucAGCaAGCcuGCAGGCCa--- -3' miRNA: 3'- -GUCCGG----UCGcUCGuuCGUCCGGauga -5' |
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13092 | 3' | -58.8 | NC_003401.1 | + | 75088 | 0.66 | 0.71236 |
Target: 5'- uGGGCgCuuGGCGGGCAGGCAGaGUUUAa- -3' miRNA: 3'- gUCCG-G--UCGCUCGUUCGUC-CGGAUga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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